PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_48979CBE1.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family BBR-BPC
Protein Properties Length: 348aa    MW: 38716 Da    PI: 10.3305
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_48979CBE1.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind350.92.9e-10713481301
              GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia..erdaki.......rernlalsekkaavaerd..................maf 60 
                            mdddgs + rn+g+ye     k nlglqlm s+a   rd+k+        +++ al+++ +++++rd                  m+f
  Traes_4AS_48979CBE1.2   1 MDDDGSLSiRNWGFYETM---KGNLGLQLMPSVAggHRDTKPllpngtfLQHHNALHHPPHSHHPRDygngepsggmpteppaihMDF 85 
                            9**************965...*************999*****9***9995555569******************************** PP

              GAGA_bind  61 lqrdkalaernkalverdnkllalllvensla.............................salpvgvqvlsgtksidslqqlsepql 119
                            ++++++++  ++++ ++++   +++++++ +                              +++p+g +++++++ +++lq+     +
  Traes_4AS_48979CBE1.2  86 VRNEAWMHPSQHQHQQQHQHHHQNQHQQQHQHqhqhsreqkvlhavplgpaghighpghavHHHPTGFGMMPDARGAHTLQM-----M 168
                            *******983333333333333232222222223455789999999999999999999999999999999999999999999.....6 PP

              GAGA_bind 120 edsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDest 207
                            +++  +++eeek+  +  +e+++++  k+ +kkrq++++pk +k kk+kk  +++ ++ +++   +rs+ + k +++v+ng+++D+s+
  Traes_4AS_48979CBE1.2 169 QPQEPPVPEEEKIAPPL-VEEHSVVGSKPPVKKRQQGRQPKLPKPKKPKK-VATPGEDGAPKARAPRSRGPLKPVEMVINGIDFDISR 254
                            66677777888766555.556777788888888*****************.556667777777779********************** PP

              GAGA_bind 208 lPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtn 295
                            +P+PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP++tkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtn
  Traes_4AS_48979CBE1.2 255 IPTPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTN 342
                            **************************************************************************************** PP

              GAGA_bind 296 kfvtir 301
                            kfvtir
  Traes_4AS_48979CBE1.2 343 KFVTIR 348
                            *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062176.8E-1191348IPR010409GAGA-binding transcriptional activator
SMARTSM012262.3E-1721348IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDDDGSLSIR NWGFYETMKG NLGLQLMPSV AGGHRDTKPL LPNGTFLQHH NALHHPPHSH  60
HPRDYGNGEP SGGMPTEPPA IHMDFVRNEA WMHPSQHQHQ QQHQHHHQNQ HQQQHQHQHQ  120
HSREQKVLHA VPLGPAGHIG HPGHAVHHHP TGFGMMPDAR GAHTLQMMQP QEPPVPEEEK  180
IAPPLVEEHS VVGSKPPVKK RQQGRQPKLP KPKKPKKVAT PGEDGAPKAR APRSRGPLKP  240
VEMVINGIDF DISRIPTPVC SCTGAPQQCY RWGAGGWQSA CCTTSISTYP LPMNTKRRGA  300
RIAGRKMSQG AFKKVLEKLA GEGYNLNNPI DLKTFWAKHG TNKFVTIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211217PKKPKKV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5072140.0AJ507214.1 Hordeum vulgare bbr gene for barley B recombinant.
GenBankAK3726720.0AK372672.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3008N24.
GenBankAK3763890.0AK376389.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165863.10.0protein Barley B recombinant
SwissprotQ8GUC30.0BBR_HORVU; Protein Barley B recombinant
TrEMBLA0A3B6HR630.0A0A3B6HR63_WHEAT; Uncharacterized protein
TrEMBLA0A446QQ330.0A0A446QQ33_TRITD; Uncharacterized protein
STRINGTraes_4AS_48979CBE1.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68120.14e-63basic pentacysteine 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]