PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Traes_4AS_1EA23DE08.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 231aa MW: 25530.5 Da PI: 6.571

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AS_1EA23DE08.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.5e-19	61	114	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F+k+r++ + ++ +LA++lgL+++qV vWFqNrRa++k Traes_4AS_1EA23DE08.1 61 KKRRLSDEQAQFLEMNFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYK 114 45689************************************************9 PP
2	HD-ZIP_I/II	111	7.9e-36	61	152	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kkrrls+eq+++LE++F++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n+rLe+e +L+e Traes_4AS_1EA23DE08.1 61 KKRRLSDEQAQFLEMNFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYKSKLIEEEFSKLRAAHDAVVVHNCRLEAELLRLKE 148 9**************************************************************************************9 PP HD-ZIP_I/II 90 elke 93 +l+e Traes_4AS_1EA23DE08.1 149 RLAE 152 9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.633	56	116	IPR001356	Homeobox domain
SMART	SM00389	3.1E-15	59	120	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-16	60	123	IPR009057	Homeodomain-like
CDD	cd00086	1.24E-15	61	116	No hit	No description
Pfam	PF00046	1.4E-16	61	114	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-16	61	114	IPR009057	Homeodomain-like
PRINTS	PR00031	5.1E-6	87	96	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	91	114	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.1E-6	96	112	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSSEEGERLL FPSFVFPDSF PADDATPVVS GGEQKKAGRQ RRRRRARQAA SGEGGGDDAA 60 KKRRLSDEQA QFLEMNFRKE RKLETPRKVQ LAAELGLDTK QVAVWFQNRR ARYKSKLIEE 120 EFSKLRAAHD AVVVHNCRLE AELLRLKERL AETEEEKNKA MAASAAATGG GGGSSPSSSS 180 FSTVTAMVGG QQFGMEEVET DLTYMSEYAY TNYMMDLAAG GYLGGVYDQF S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	63	RRRARQAASGEGGGDDAAKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365295	0.0	AK365295.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033D08.
GenBank	AK370253	0.0	AK370253.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107J20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020157992.1	1e-113	homeobox-leucine zipper protein HOX12-like
Swissprot	Q10QF2	4e-85	HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBL	A0A3B6HS89	1e-167	A0A3B6HS89_WHEAT; Uncharacterized protein
TrEMBL	A0A446QM08	1e-167	A0A446QM08_TRITD; Uncharacterized protein
STRING	Traes_4AS_1EA23DE08.1	1e-168	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-29	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Gao S,Fang J,Xu F,Wang W,Chu C Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1. Plant Cell, 2016. 28(3): p. 680-95 [PMID:26977084]