PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_19FA06316.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 561aa    MW: 59862.2 Da    PI: 5.1321
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_19FA06316.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.72.7e-941225131373
                   GRAS   1 lvelLlecAeavss..gdlelaqalLarlsel.aspdgd....pmqRlaayfteALaarlar..svselykalppsetseknsseela 79 
                            l +lL+++Aea+s   ++ ela+ +L rl+e+ +s +g+    +m+Rlaa+ft AL+  l +  sv +++++ ++ +++++++ ++l+
  Traes_4AS_19FA06316.1 122 LLHLLMAAAEALSGphKSRELARVILVRLKEMvSSTSGNagasNMERLAAHFTDALQGLLDGshSVAGTSRQAAMAASHHHSTGDVLT 209
                            579**********8557777************555555566669****************99556677888888888888889***** PP

                   GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerL 165
                            a+++++++sP++kf+h+taNqaIleav+g++rvHi+D+d+ +G+QW++L+qa++sRp   +pp+lRiT++ ++  g +++++e g+rL
  Traes_4AS_19FA06316.1 210 AFQMLQDMSPYMKFGHFTANQAILEAVAGDRRVHIVDYDLAEGIQWASLMQAMTSRPdgVSPPHLRITAITRSGGGGARAVQEAGRRL 297
                            *********************************************************6666***********7777************ PP

                   GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadh..ns 250
                            a fA ++g pf+f     ++ e +++ + r+ +gE+l+ n++l+       +v  +     ++L  + sl +kvv+vve+e +   n+
  Traes_4AS_19FA06316.1 298 AAFAGSIGQPFSFGHCRLDSDERFRPATVRMVKGETLVANCILHQAAAT-TTVRRPTgSVASFLTGMASLGAKVVTVVEEEGEAekNE 384
                            **************99999**********************99665554.333333347899******************97763255 PP

                   GRAS 251 e........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                            e         F+ rf+e l+ ysa+ dslea++p++s+ r  vEr++l+++i  +v+ + +    + e  + W e+++ +GF+ vpls
  Traes_4AS_19FA06316.1 385 EeasdaaagGFVGRFMEELHRYSAVWDSLEAGFPTQSRVRGLVERVILAPNIAGAVSRAYRG--TDGEGRRGWGEWMRGSGFEMVPLS 470
                            599999999************************************************99887..899999****************** PP

                   GRAS 331 ekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                             ++ +qa+lll  ++ dgy+vee   + +vlgWk r+L+s+S+W
  Traes_4AS_19FA06316.1 471 CFNHSQARLLLGLFN-DGYTVEETrPNKIVLGWKARRLLSASVW 513
                            ***************.******87367788************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.99796494IPR005202Transcription factor GRAS
PfamPF035149.4E-92122513IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MDVTMEDVVG DLEISGYSSI STSPSSSLDD GMGLYGWNAL SPVADWGLFS SDDGGHDLHG  60
LIESMLCDDA LIGKPDEHPT MFTDGPCYSN ASEPSSTTTT NPGTPVQHDD TPDCNPEKGL  120
RLLHLLMAAA EALSGPHKSR ELARVILVRL KEMVSSTSGN AGASNMERLA AHFTDALQGL  180
LDGSHSVAGT SRQAAMAASH HHSTGDVLTA FQMLQDMSPY MKFGHFTANQ AILEAVAGDR  240
RVHIVDYDLA EGIQWASLMQ AMTSRPDGVS PPHLRITAIT RSGGGGARAV QEAGRRLAAF  300
AGSIGQPFSF GHCRLDSDER FRPATVRMVK GETLVANCIL HQAAATTTVR RPTGSVASFL  360
TGMASLGAKV VTVVEEEGEA EKNEEEASDA AAGGFVGRFM EELHRYSAVW DSLEAGFPTQ  420
SRVRGLVERV ILAPNIAGAV SRAYRGTDGE GRRGWGEWMR GSGFEMVPLS CFNHSQARLL  480
LGLFNDGYTV EETRPNKIVL GWKARRLLSA SVWAPPPLSV PSSPADGVCQ PMGMAPSSGG  540
FGRTEYDYVD SFLVEPAYAL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-5116451553379Protein SCARECROW
5b3h_D3e-5116451553379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151677.10.0nodulation-signaling pathway 2 protein-like
SwissprotQ5NE241e-158NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A3B6HT470.0A0A3B6HT47_WHEAT; Uncharacterized protein
TrEMBLA0A446QRF00.0A0A446QRF0_TRITD; Uncharacterized protein
STRINGTraes_4AS_19FA06316.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.17e-99GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]