PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_18663793B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 25098.8 Da PI: 5.062 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 6e-18 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p + +r++lg++ t+e Aa+a++aa ++l+g Traes_4AS_18663793B.1 45 QYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 94 69****998.**********7.....335************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-29 | 44 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-11 | 45 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.102 | 45 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.20E-18 | 45 | 101 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-19 | 45 | 103 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-35 | 45 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-8 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-8 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MVKNHPGGGT SRCEAAAAMA ESGGGGGTAA LCGGGSRQPA MAVRQYKGVR MRSWGSWVSE 60 IRAPHQKRRI WLGSYATPEA AARAYDAALL CLKGSDAVLN FPSSSSASPS SPHSLPSPAD 120 QHADDLSPRS IQRAAAAAAA AFEATRIVAG VVDDSCSSSA EATTPTSVSV STLGSADVQE 180 HATSSMASAG SPVGDHDELW TELDAFASPK LMDLIAAGHA TPFSSTWEEP EEDGEMMRLW 240 SFC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356733 | 0.0 | AK356733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1039C08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189509.1 | 1e-130 | ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | A0A3B6HPM9 | 1e-174 | A0A3B6HPM9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QRC6 | 1e-174 | A0A446QRC6_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AS_18663793B.1 | 1e-175 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10830 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 2e-21 | ERF family protein |
Publications ? help Back to Top | |||
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