PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_EE88645E2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 310aa    MW: 33669.9 Da    PI: 7.0493
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_EE88645E2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.48.4e-16104155155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +rr+h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Traes_4AL_EE88645E2.1 104 QRRTHIAVERNRRRQMNEYLAALRSLMPQS---YAQRGDQASIVGGAINYVKELE 155
                            79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.45E-16102159No hitNo description
Gene3DG3DSA:4.10.280.102.3E-15102159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-18103172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.583103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-13104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MALEAVVFAQ GHFGYGQAPG LGPWCDMVGA GGFLEDCWDQ QLLAAPVAPN AEDQWEPVSS  60
WDQSEASSEG KAAAPEPAMA AAATGRRKRR RTKIVKNKEE VESQRRTHIA VERNRRRQMN  120
EYLAALRSLM PQSYAQRGDQ ASIVGGAINY VKELEQLLQS LEVQKSVKNR TGRSPFASSF  180
TFPQYSTSCN ATQATASDGG SGADSSGLKS EAGVADIEVT MVEGHASLKV LSRRRPRQLL  240
RLLAGLQQLR IPPLHLNVTT VDAMVLYSFS LKVEDGSKLS SVEDIAAAVH EILARIQREE  300
EEAGRLSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18690RKRRR
28691RKRRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153287.10.0transcription factor bHLH96-like
SwissprotQ9C7T43e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3B6I5520.0A0A3B6I552_WHEAT; Uncharacterized protein
TrEMBLA0A446RGL90.0A0A446RGL9_TRITD; Uncharacterized protein
STRINGTraes_4AL_EE88645E2.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]