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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_DACD935B2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 27383.6 Da PI: 7.6447 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.6e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+teEd +l + ++++G g+W+ I+r g R +k+c++rw++yl Traes_4AL_DACD935B2.1 14 RGPWSTEEDAKLTNHIAKHGLGRWSDIPRLAGIERGGKSCRLRWLNYL 61 89******************************6699**********97 PP | |||||||
2 | Myb_DNA-binding | 37.8 | 4.6e-12 | 71 | 109 | 5 | 45 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++eE++l+++++ G+ W++Ia++++ gRt++ +k++w+ Traes_4AL_DACD935B2.1 71 SQEEEDLIIQLHSIIGNS-WTLIAACLP-GRTDNGVKNFWN 109 89**************99.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.669 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-28 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.05E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 20.24 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-8 | 66 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-20 | 69 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-10 | 71 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.95E-9 | 71 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSKAPRGPRK PATRGPWSTE EDAKLTNHIA KHGLGRWSDI PRLAGIERGG KSCRLRWLNY 60 LRPDLKRAAL SQEEEDLIIQ LHSIIGNSWT LIAACLPGRT DNGVKNFWNA SIKHKLRRRG 120 IDPDTHEPVV DEGSRNGDAQ YILPSHLEAG SNACSHGALT LPDSITRYVD TDPLQLQHGV 180 VLVQPAVSSS STVGSDPSGS GSDTGEQWNN LVDGSQLFDL TESSTTTTTK SGTTNHACSI 240 ADWKLVGAAP RVP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-29 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163437.1 | 1e-126 | myb-related protein Hv33-like | ||||
Refseq | XP_020163438.1 | 1e-126 | myb-related protein Hv33-like | ||||
TrEMBL | A0A3B6I0Z7 | 0.0 | A0A3B6I0Z7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446RFZ8 | 0.0 | A0A446RFZ8_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_DACD935B2.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 3e-54 | myb domain protein 86 |
Publications ? help Back to Top | |||
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