PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 382aa MW: 41459.1 Da PI: 9.7745

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AL_CC5803BED.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.4e-17	108	155	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl Traes_4AL_CC5803BED.1 108 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 155 79****************************99**********97 PP
2	Myb_DNA-binding	60.3	4.1e-19	161	205	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++++lG++ W++Ia +++ gRt++++k++w+++ Traes_4AL_CC5803BED.1 161 RGNFTEEEDELIIKLHELLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 205 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-24	99	158	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.087	103	155	IPR017930	Myb domain
SuperFamily	SSF46689	6.7E-30	107	202	IPR009057	Homeodomain-like
SMART	SM00717	7.4E-14	107	157	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-15	108	155	IPR001005	SANT/Myb domain
CDD	cd00167	2.43E-11	110	155	No hit	No description
PROSITE profile	PS51294	29.51	156	210	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-28	159	210	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-18	160	208	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-17	161	205	IPR001005	SANT/Myb domain
CDD	cd00167	3.53E-14	163	206	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MAQRDPRQWG PAPLHPHPPP PRIKPTTHPR LPSLSPPRSL ALKKLARTHA PPTPHRSSFP 60 SDPPTATTAY IISPLLVCGA AGSCLQRTYV PAGGMGRSPC CEKAHTNKGA WTKEEDQRLI 120 AYIKAHGEGC WRSLPKAAGL LRCGKSCRLR WINYLRPDLK RGNFTEEEDE LIIKLHELLG 180 NKWSLIAGRL PGRTDNEIKN YWNTHIKRKL LARGMDPHTH RPLNAIAGAA MPAQQLRVAH 240 QHQYAAATPG GHHLQPQQQD PFAALSSSAE PACSHSSDDE PAGSATPPPP SRRHLGIDLN 300 LSISLAPYQP DDPAVKQEAA TTASHNNATT STSAACMCLN RLGFQGAGEG CRCGGASSVP 360 MQQQASTQHM FRFIAPLEGG RQ

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MAQRDPRQWG PAPLHPHPPP PRIKPTTHPR LPSLSPPRSL ALKKLARTHA PPTPHRSSFP  60
SDPPTATTAY IISPLLVCGA AGSCLQRTYV PAGGMGRSPC CEKAHTNKGA WTKEEDQRLI  120
AYIKAHGEGC WRSLPKAAGL LRCGKSCRLR WINYLRPDLK RGNFTEEEDE LIIKLHELLG  180
NKWSLIAGRL PGRTDNEIKN YWNTHIKRKL LARGMDPHTH RPLNAIAGAA MPAQQLRVAH  240
QHQYAAATPG GHHLQPQQQD PFAALSSSAE PACSHSSDDE PAGSATPPPP SRRHLGIDLN  300
LSISLAPYQP DDPAVKQEAA TTASHNNATT STSAACMCLN RLGFQGAGEG CRCGGASSVP  360
MQQQASTQHM FRFIAPLEGG RQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-31	108	210	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054758	1e-166	BT054758.1 Zea mays full-length cDNA clone ZM_BFb0028G03 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020173633.1	0.0	myb-related protein 330-like
Swissprot	P81395	1e-89	MYB30_ANTMA; Myb-related protein 330
TrEMBL	A0A446R576	0.0	A0A446R576_TRITD; Uncharacterized protein
STRING	Traes_4AL_CC5803BED.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	3e-88	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]