PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_B44DF4ACC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 33381 Da PI: 7.2191 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.4 | 9.2e-56 | 6 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeel+++yL +kv++ ++ + ++i+++d++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgk Traes_4AL_B44DF4ACC.1 6 LPPGFRFHPTDEELITYYLSRKVSDFSFAT-RAIADADLNKCEPWDLPSKASMGEKEWYFFSMRDRKYPTGIRTNRATESGYWKTTGK 92 79*************************999.88***************999999********************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dke+++ +g+lvg+kktLvfy grapkgekt+Wvmheyr+ Traes_4AL_B44DF4ACC.1 93 DKEIFH-GGRLVGMKKTLVFYGGRAPKGEKTSWVMHEYRI 131 ******.*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-65 | 2 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.179 | 6 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-29 | 7 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MMEEGLPPGF RFHPTDEELI TYYLSRKVSD FSFATRAIAD ADLNKCEPWD LPSKASMGEK 60 EWYFFSMRDR KYPTGIRTNR ATESGYWKTT GKDKEIFHGG RLVGMKKTLV FYGGRAPKGE 120 KTSWVMHEYR IQNKFPYKPN KEEWVVCRVF KKSQIVKMRH PHDSPEMDSP CNEAHASLGE 180 LGEIDVSSML GGFAPAGANA SGDNFGHRID MGAYMNWLAA ANQGAAAMLP WAAAAAPGLL 240 GTVFSANPAM QKALAPFAGC SQLPRDVGGD ALFGNAMAKV DMECEQPPQL EMHESTWRTF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-56 | 1 | 153 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-56 | 1 | 153 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-56 | 1 | 153 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-56 | 1 | 153 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-56 | 1 | 153 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-56 | 1 | 153 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-56 | 1 | 153 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-56 | 1 | 153 | 15 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363171 | 0.0 | AK363171.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013D22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181735.1 | 0.0 | protein CUP-SHAPED COTYLEDON 2-like | ||||
Swissprot | O04017 | 3e-76 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A446R694 | 0.0 | A0A446R694_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_B44DF4ACC.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7919 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 2e-93 | NAC domain containing protein 58 |