 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Traes_4AL_AD9C8CB77.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
Family |
LBD |
Protein Properties |
Length: 173aa MW: 18458.9 Da PI: 8.1371 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Traes_4AL_AD9C8CB77.1 | genome | IWGSC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 140.9 | 4.3e-44 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
+CaaCk+lrr+C+++Cv+apyfp+ +p++fa vhk+FGasn++kll+++p e+r d++sslvyeA+ar+rdP+yG+vg i++lq+q+e
Traes_4AL_AD9C8CB77.1 13 PCAACKLLRRRCSPGCVFAPYFPSGEPHRFASVHKVFGASNISKLLQEIPAEHRGDTVSSLVYEANARVRDPIYGCVGAITSLQRQVE 100
7*************************************************************************************** PP
DUF260 89 qlkaelallkee 100
+l+++lal+++e
Traes_4AL_AD9C8CB77.1 101 SLQTQLALAQAE 112
********9986 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 173 aa
Download sequence Send
to blast |
MKEVAAAGAG VSPCAACKLL RRRCSPGCVF APYFPSGEPH RFASVHKVFG ASNISKLLQE 60 IPAEHRGDTV SSLVYEANAR VRDPIYGCVG AITSLQRQVE SLQTQLALAQ AEMVRLRMAN 120 AYGAARHNGG GSTASGSPSS MSSPTKTADH HDMAVDQSGV MELELECSRF WAY
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT069911 | 2e-89 | BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds. |
GenBank | KJ727650 | 2e-89 | KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds. |