PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_AD9C8CB77.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 173aa    MW: 18458.9 Da    PI: 8.1371
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_AD9C8CB77.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.94.3e-44131121100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+C+++Cv+apyfp+ +p++fa vhk+FGasn++kll+++p e+r d++sslvyeA+ar+rdP+yG+vg i++lq+q+e
  Traes_4AL_AD9C8CB77.1  13 PCAACKLLRRRCSPGCVFAPYFPSGEPHRFASVHKVFGASNISKLLQEIPAEHRGDTVSSLVYEANARVRDPIYGCVGAITSLQRQVE 100
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            +l+++lal+++e
  Traes_4AL_AD9C8CB77.1 101 SLQTQLALAQAE 112
                            ********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.09612113IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-4313110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MKEVAAAGAG VSPCAACKLL RRRCSPGCVF APYFPSGEPH RFASVHKVFG ASNISKLLQE  60
IPAEHRGDTV SSLVYEANAR VRDPIYGCVG AITSLQRQVE SLQTQLALAQ AEMVRLRMAN  120
AYGAARHNGG GSTASGSPSS MSSPTKTADH HDMAVDQSGV MELELECSRF WAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4981157113LOB family transfactor Ramosa2.1
5ly0_B2e-4981157113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699112e-89BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds.
GenBankKJ7276502e-89KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181605.12e-89LOB domain-containing protein 4-like
SwissprotQ8LBW36e-55LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A3B6I0U91e-125A0A3B6I0U9_WHEAT; Uncharacterized protein
TrEMBLA0A446RAT41e-125A0A446RAT4_TRITD; Uncharacterized protein
STRINGTraes_4AL_AD9C8CB77.11e-126(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-50LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]