PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_ABD465CB6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HSF | ||||||||
Protein Properties | Length: 115aa MW: 12810.5 Da PI: 12.6144 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 56.5 | 7.5e-18 | 39 | 96 | 24 | 90 |
SSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 24 ngnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 + nsfvv d +++ +Lp F h +faSFvRQLn YgF+kv+ ++ weF+h sF+ + Traes_4AL_ABD465CB6.1 39 TDNSFVVADVPALSRALLPARFGHAKFASFVRQLNAYGFRKVHPDR---------WEFAHASFTSSC 96 559****************************************999.........********8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.1E-7 | 34 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.67E-14 | 38 | 94 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.3E-18 | 38 | 94 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-14 | 38 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-6 | 55 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-6 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MATPWRAAAA AWPWRRSWPR RTGWWTTRRR TAPLRGGSTD NSFVVADVPA LSRALLPARF 60 GHAKFASFVR QLNAYGFRKV HPDRWEFAHA SFTSSCATSS AAGATSSRTT AKRTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566902.1 | 1e-21 | heat stress transcription factor C-1a | ||||
Refseq | XP_024314176.1 | 1e-21 | heat stress transcription factor C-1a | ||||
Swissprot | Q6VBA4 | 5e-21 | HFC1A_ORYSJ; Heat stress transcription factor C-1a | ||||
TrEMBL | A0A287M5S1 | 2e-20 | A0A287M5S1_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A453G3K9 | 4e-21 | A0A453G3K9_AEGTS; Uncharacterized protein | ||||
TrEMBL | I1HPK7 | 2e-20 | I1HPK7_BRADI; Uncharacterized protein | ||||
STRING | Traes_4AL_ABD465CB6.1 | 1e-74 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 3e-19 | heat shock factor 1 |
Publications ? help Back to Top | |||
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