PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AL_ABD465CB6.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 115aa MW: 12810.5 Da PI: 12.6144

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AL_ABD465CB6.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	56.5	7.5e-18	39	96	24	90
SSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 24 ngnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 + nsfvv d +++ +Lp F h +faSFvRQLn YgF+kv+ ++ weF+h sF+ + Traes_4AL_ABD465CB6.1 39 TDNSFVVADVPALSRALLPARFGHAKFASFVRQLNAYGFRKVHPDR---------WEFAHASFTSSC 96 559**************************************999.........******8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	4.1E-7	34	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	6.67E-14	38	94	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.3E-18	38	94	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.1E-14	38	95	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.4E-6	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.4E-6	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MATPWRAAAA AWPWRRSWPR RTGWWTTRRR TAPLRGGSTD NSFVVADVPA LSRALLPARF 60 GHAKFASFVR QLNAYGFRKV HPDRWEFAHA SFTSSCATSS AAGATSSRTT AKRTT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566902.1	1e-21	heat stress transcription factor C-1a
Refseq	XP_024314176.1	1e-21	heat stress transcription factor C-1a
Swissprot	Q6VBA4	5e-21	HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBL	A0A287M5S1	2e-20	A0A287M5S1_HORVV; Uncharacterized protein
TrEMBL	A0A453G3K9	4e-21	A0A453G3K9_AEGTS; Uncharacterized protein
TrEMBL	I1HPK7	2e-20	I1HPK7_BRADI; Uncharacterized protein
STRING	Traes_4AL_ABD465CB6.1	1e-74	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	3e-19	heat shock factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]