PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 318aa MW: 34975.6 Da PI: 4.6651

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AL_99A941299.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.6e-19	64	115	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ eq+++Le+ Fe +++++ e+++++A+ lgL rqV vWFqNrRa++k Traes_4AL_99A941299.1 64 RRLALEQVRALERSFETDNKLDPERKARIARDLGLHPRQVAVWFQNRRARWK 115 467789*********************************************9 PP
2	HD-ZIP_I/II	128.8	2.2e-41	62	153	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kkrrl+ eqv++LE+sFe+++kL+perK+++ar+Lgl+prqvavWFqnrRAR+ktkqlE+d++aL++++dal+++ ++L++++++L++ Traes_4AL_99A941299.1 62 KKRRLALEQVRALERSFETDNKLDPERKARIARDLGLHPRQVAVWFQNRRARWKTKQLERDFNALRARHDALRADCDALRRDKDALAA 149 9**************************************************************************************9 PP HD-ZIP_I/II 90 elke 93 e++e Traes_4AL_99A941299.1 150 EIHE 153 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.84E-18	60	119	IPR009057	Homeodomain-like
SMART	SM00389	1.9E-19	60	121	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.552	62	117	IPR001356	Homeobox domain
CDD	cd00086	8.65E-17	62	118	No hit	No description
Pfam	PF00046	9.0E-17	64	115	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.5E-19	69	116	IPR009057	Homeodomain-like
PRINTS	PR00031	4.4E-5	88	97	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	92	115	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.4E-5	97	113	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.9E-16	117	158	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MKRQIKRPTR SQESPEPGEK LAFAEKENLL AAYMEHDEPE LEEADEEEEE EERAMSCGLG 60 GKKRRLALEQ VRALERSFET DNKLDPERKA RIARDLGLHP RQVAVWFQNR RARWKTKQLE 120 RDFNALRARH DALRADCDAL RRDKDALAAE IHELREKLST KPETSVKAEA AGNADAAEER 180 LQQATMIGAA VCKDGSSDSD SSAVFNDEAS PYSGAVFEQQ GFMGFGASFL DSASAAAATT 240 GGGCSSLPML EPKWPGAYPY DAGRSGGYGF TEEWLAGSDA IGNDGSAAFF SEEHVSNLNF 300 GWCSSGAEGF DLQSYCKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	117	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353965	0.0	AK353965.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1004B20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190062.1	0.0	homeobox-leucine zipper protein HOX13-like
Swissprot	Q10QP3	1e-109	HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13
TrEMBL	A0A3B6I175	0.0	A0A3B6I175_WHEAT; Uncharacterized protein
STRING	Traes_4AL_99A941299.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-30	homeobox 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]