PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_7C4C68FD0.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YA | ||||||||
Protein Properties | Length: 269aa MW: 28999.3 Da PI: 9.8198 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.5 | 3.8e-32 | 174 | 230 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e e+k +k+rkpylheSRh+hA+rR+Rg+gGrF Traes_4AL_7C4C68FD0.2 174 EEPVYVNAKQYHGILRRRQSRAKAELERKA-IKARKPYLHESRHQHAMRRARGTGGRF 230 69***************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.2E-36 | 172 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.039 | 173 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.3E-27 | 175 | 230 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.7E-25 | 176 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 178 | 198 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.7E-25 | 207 | 230 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MSGMGSRPGE SNLVEPRGLP SGMAMQPWWT GTGFGAVSPA VVAPGSGAGI SLSSNPLGGG 60 AGKGATTQGK KKTADDDPRA QSSDDDSQRS GEPKDGSFEE ENQRATSRMP ALATDYLAPY 120 SHLELNQPMA SATYPYPDAY YTGMVGPYGA QAVAHFQLPG LTHPRMPLPL EVSEEPVYVN 180 AKQYHGILRR RQSRAKAELE RKAIKARKPY LHESRHQHAM RRARGTGGRF LNTKKDENGA 240 SNGGRTEANK GEQSSDYLRV PPDLHLRQA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-20 | 174 | 238 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354116 | 0.0 | AK354116.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1005C04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157303.1 | 1e-176 | nuclear transcription factor Y subunit A-7-like | ||||
Refseq | XP_020157304.1 | 1e-176 | nuclear transcription factor Y subunit A-7-like | ||||
TrEMBL | A0A446R992 | 0.0 | A0A446R992_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_7C4C68FD0.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8205 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 7e-42 | nuclear factor Y, subunit A7 |
Publications ? help Back to Top | |||
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