PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_72ECC7747.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 341aa    MW: 37757.9 Da    PI: 7.5646
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_72ECC7747.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like986.6e-3148101255
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            prlrWtpeLH++Fv+ave+LGG++ AtPk +l+lm+v gL++ hvkSHLQ+YR+
  Traes_4AL_72ECC7747.1  48 PRLRWTPELHHCFVRAVERLGGQDLATPKLVLQLMNVRGLSIGHVKSHLQMYRS 101
                            9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.06444104IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2944102IPR009057Homeodomain-like
SuperFamilySSF466893.05E-1545102IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-2347103IPR006447Myb domain, plants
PfamPF002491.5E-949100IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGTSNMGNEG SSAASNDDST VEEEGGQDMT RAGDSSSSVR PYVRSKNPRL RWTPELHHCF  60
VRAVERLGGQ DLATPKLVLQ LMNVRGLSIG HVKSHLQMYR SKKIDDSGQV IIGHLQQGGQ  120
VYNYAHLPFH HRVSGAGTML SRFGTRPCPP SRGSWHEPYW LHGHRLLGSK PYYSSSAAAH  180
HDEALLRARA QHVSGYNPAL IVQESSSSRN DYHAMNRYHY ERRPLQAATT EDNDDQIHGR  240
DINLDLSLDI GGGQRLEMKS KRGCTRWGKQ AEEDDDDQVD VNEELKSTAT RLSLSLLSPS  300
PITLDRKGSS ASDHALGLDV NVDKIGKVQY AIRASTLDLT I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1649103357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1649103357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1649103357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1649103357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072971e-70AK107297.1 Oryza sativa Japonica Group cDNA clone:002-126-C05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151276.10.0uncharacterized protein LOC109736464
TrEMBLA0A3B6HWT20.0A0A3B6HWT2_WHEAT; Uncharacterized protein
STRINGTraes_4AL_72ECC7747.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-39G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]