PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 341aa MW: 37757.9 Da PI: 7.5646

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AL_72ECC7747.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98	6.6e-31	48	101	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+ave+LGG++ AtPk +l+lm+v gL++ hvkSHLQ+YR+ Traes_4AL_72ECC7747.1 48 PRLRWTPELHHCFVRAVERLGGQDLATPKLVLQLMNVRGLSIGHVKSHLQMYRS 101 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.064	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-29	44	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.05E-15	45	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-23	47	103	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-9	49	100	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MGTSNMGNEG SSAASNDDST VEEEGGQDMT RAGDSSSSVR PYVRSKNPRL RWTPELHHCF 60 VRAVERLGGQ DLATPKLVLQ LMNVRGLSIG HVKSHLQMYR SKKIDDSGQV IIGHLQQGGQ 120 VYNYAHLPFH HRVSGAGTML SRFGTRPCPP SRGSWHEPYW LHGHRLLGSK PYYSSSAAAH 180 HDEALLRARA QHVSGYNPAL IVQESSSSRN DYHAMNRYHY ERRPLQAATT EDNDDQIHGR 240 DINLDLSLDI GGGQRLEMKS KRGCTRWGKQ AEEDDDDQVD VNEELKSTAT RLSLSLLSPS 300 PITLDRKGSS ASDHALGLDV NVDKIGKVQY AIRASTLDLT I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-16	49	103	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	49	103	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	49	103	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	49	103	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107297	1e-70	AK107297.1 Oryza sativa Japonica Group cDNA clone:002-126-C05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020151276.1	0.0	uncharacterized protein LOC109736464
TrEMBL	A0A3B6HWT2	0.0	A0A3B6HWT2_WHEAT; Uncharacterized protein
STRING	Traes_4AL_72ECC7747.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4408	36	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-39	G2-like family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]