PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_3193F9838.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 365aa    MW: 40503.6 Da    PI: 8.7957
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_3193F9838.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like38.92e-12323361442
                G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLt 42 
                            lrWt +LH+ Fveave  GG+ +A P ++++ m+  g+t
  Traes_4AL_3193F9838.2 323 LRWTDDLHKIFVEAVEYQGGPYEAKPTAVKQRMEAMGVT 361
                            89************************9997776655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF517355.65E-416247IPR016040NAD(P)-binding domain
PRINTSPR000813.1E-14623IPR002347Short-chain dehydrogenase/reductase SDR
PfamPF001063.2E-367221IPR002347Short-chain dehydrogenase/reductase SDR
CDDcd052331.68E-447244No hitNo description
Gene3DG3DSA:3.40.50.7205.0E-467244IPR016040NAD(P)-binding domain
PROSITE patternPS000610165193IPR020904Short-chain dehydrogenase/reductase, conserved site
PRINTSPR000813.1E-14178197IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000813.1E-14202219IPR002347Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:1.10.10.601.6E-9320365IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0034256Molecular Functionchlorophyll(ide) b reductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAPPYNVLIT GSTKGIGYAL ARKFLKAGDN VVICSRSAER VESVTNDLKK EFGEQHVWGT  60
VCDVREGKDV KGLVDFARDK LEYIDIWVHS HPSLTKHLHC TCTFIPINNA GSNAYSYKPL  120
VETSDEALIE VITTNTLGLM LCCREAINMM WNQPRGGHIF NIDGAGSDGR PTPRFAAYGA  180
TKRSVVHLTK SLQAELQMNE VNNVVVHNLS PGMVTTDLLM SGATTKQAKF FINILAETPD  240
VVADYLVPNI REIPTKQSMK PTYIRFLTGL KAYSRIFSRI AFGARRNKMM SNDKPTENSD  300
SSYMSGILAS CLLRAMQPTR SLLRWTDDLH KIFVEAVEYQ GGPYEAKPTA VKQRMEAMGV  360
TGLTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuy_A6e-15721830215Short chain dehydrogenase/reductase
4iuy_B6e-15721830215Short chain dehydrogenase/reductase
4iuy_C6e-15721830215Short chain dehydrogenase/reductase
4iuy_D6e-15721830215Short chain dehydrogenase/reductase
4iuy_E6e-15721830215Short chain dehydrogenase/reductase
4iuy_F6e-15721830215Short chain dehydrogenase/reductase
4iuy_G6e-15721830215Short chain dehydrogenase/reductase
4iuy_H6e-15721830215Short chain dehydrogenase/reductase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for chlorophyll b degradation.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by dark treatment. {ECO:0000269|PubMed:18778405}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3690030.0AK369003.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083K11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181142.10.0chlorophyll(ide) b reductase NOL, chloroplastic-like
SwissprotQ84ST40.0NOL_ORYSJ; Chlorophyll(ide) b reductase NOL, chloroplastic
TrEMBLA0A446WML80.0A0A446WML8_TRITD; Uncharacterized protein
STRINGTraes_4AL_3193F9838.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109381212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06020.14e-08G2-like family protein
Publications ? help Back to Top
  1. Kusaba M, et al.
    Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence.
    Plant Cell, 2007. 19(4): p. 1362-75
    [PMID:17416733]
  2. Sato Y, et al.
    Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice.
    Plant J., 2009. 57(1): p. 120-31
    [PMID:18778405]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]