PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_9A5A4FE3E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 269aa    MW: 29998.1 Da    PI: 7.5959
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_9A5A4FE3E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.8e-06101122223
                            EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             C +Cgk F+r  nL+ H+  H
  Traes_3DS_9A5A4FE3E.1 101 FCAICGKGFKRDANLRMHMHGH 122
                            6******************877 PP
2zf-C2H210.60.0018220233619
                            TTEEESSHHHHHHH CS
                zf-C2H2   6 CgksFsrksnLkrH 19 
                            Cg++F+rk+ L +H
  Traes_3DS_9A5A4FE3E.1 220 CGTTFTRKDKLFTH 233
                            ************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.098100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.074100127IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-5101152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SMARTSM0035571150183IPR015880Zinc finger, C2H2-like
SMARTSM0035534188210IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MANLAASGSG TSSSSVRNRA VSEDHKEEMH SPDYEELFKG LTDYAVEVEG IEIGNSLLVD  60
EHDTKDGNEV GIGIDADSLP PGTYELLQLE EDEILAPHTH FCAICGKGFK RDANLRMHMH  120
GHGDEYKSPA ALAKPPRDES LDHAAIVKRY SCPVAGCKRN RLHKGFLPLK TILCVKNHYK  180
RSHCVKNYTC SRCHAKKFSV MADLKTHEKH CGQVRWVCSC GTTFTRKDKL FTHVGLFKGH  240
TLLLPADEPE AHTRWLTQEA IKNQPRVVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977257.11e-128zinc finger protein STAR3
SwissprotQ943I62e-97STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A3B6GPT90.0A0A3B6GPT9_WHEAT; Uncharacterized protein
STRINGTraes_3DS_9A5A4FE3E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-97C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]