PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DS_9A02CF31D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 303aa MW: 34753.6 Da PI: 7.2583 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 84.9 | 7.3e-27 | 218 | 278 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 ldDg++WrKYGqK++ ++++pr+Y+rCt++ gC+++k+v+r+++dp+++ + Y+g+H++ Traes_3DS_9A02CF31D.1 218 LDDGFSWRKYGQKDILDAKHPRAYFRCTYRksqGCSATKEVQRTDDDPELFLVLYKGKHTC 278 59***************************98889*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.80.10.10 | 1.7E-8 | 13 | 168 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52058 | 5.78E-10 | 16 | 171 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PROSITE profile | PS50811 | 22.091 | 213 | 276 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.2E-26 | 216 | 278 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-24 | 216 | 278 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-37 | 218 | 280 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-25 | 219 | 278 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDELHDMERR QRLDVLTCSL EKLCDLRYLH MDYNIKVSYV LSSLFLRRLH MLCPFPKVPN 60 AIGELHNLFD LDLTIEVLED DIAILAQLQS LNRLKLHIEG KPETEEKVVI CRKGFPVLKH 120 FWLFCVRMSQ LTFEAGTMPS LEKLEVRINS LYGAAPMGIE HLLGLKEIFV FVGGCGGEGS 180 CSIRAALTLL RKAIDMRSSH PTANIKCVDN LLLLEHLLDD GFSWRKYGQK DILDAKHPRA 240 YFRCTYRKSQ GCSATKEVQR TDDDPELFLV LYKGKHTCIM ETSQASQEQR VLVPQLGLQE 300 KLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-23 | 218 | 278 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165042.1 | 0.0 | putative disease resistance RPP13-like protein 3 isoform X1 | ||||
Refseq | XP_020165043.1 | 0.0 | putative disease resistance RPP13-like protein 3 isoform X1 | ||||
TrEMBL | A0A3B6GL95 | 0.0 | A0A3B6GL95_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3DS_9A02CF31D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 7e-26 | WRKY DNA-binding protein 30 |
Publications ? help Back to Top | |||
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