PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_4E6EA6F5B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | VOZ | ||||||||
Protein Properties | Length: 381aa MW: 43236.2 Da PI: 4.9352 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 421.3 | 1.5e-129 | 86 | 303 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatak 87 p+p++fl+pkcalwdc+rpaqgse +qdycs++ha+la++e g+pgt+pv+rp+gidlkdg+lfaalsak+qgk+vg+p+cegaat+k Traes_3DL_4E6EA6F5B.1 86 PAPASFLRPKCALWDCPRPAQGSESWQDYCSMYHAELAVKEeGPPGTMPVIRPRGIDLKDGPLFAALSAKIQGKHVGVPVCEGAATTK 173 89*************************************9879********************************************* PP VOZ 88 spwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyein 175 spwna+elfdl ++ege++rewlffdkprraf+sgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqpsss+ewhlyeyein Traes_3DL_4E6EA6F5B.1 174 SPWNAPELFDLYIFEGESMREWLFFDKPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSSSYEWHLYEYEIN 261 **************************************************************************************** PP VOZ 176 eldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 + da+alyrle+k++++kksak+k ++++l ++q++++rl+a Traes_3DL_4E6EA6F5B.1 262 DRDAFALYRLEFKSSEAKKSAKSKFTCSPLIEIQQQMVRLSA 303 ****************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MSFQMYYVNQ ELSVEDFLYD DDYKINLPGS NPEILNNLEG IGHQEYLQFN LPQELPPNAY 60 LDMNNYGQNA GDGFLHMSDL LTTMSPAPAS FLRPKCALWD CPRPAQGSES WQDYCSMYHA 120 ELAVKEEGPP GTMPVIRPRG IDLKDGPLFA ALSAKIQGKH VGVPVCEGAA TTKSPWNAPE 180 LFDLYIFEGE SMREWLFFDK PRRAFDSGNR KQRSLPDYNG RGWHESRKQV MKDFGGLKRS 240 YYMDPQPSSS YEWHLYEYEI NDRDAFALYR LEFKSSEAKK SAKSKFTCSP LIEIQQQMVR 300 LSADGHVENK RTARVRTQDV STNIYPVQNN TAQASAPDAY QAASQVDQMT FLNGSVVYGP 360 HLPYGYSTEG GDFYWNSNDG A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363185 | 0.0 | AK363185.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013F10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201118.1 | 0.0 | transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 1e-119 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A453FIW7 | 0.0 | A0A453FIW7_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3DL_4E6EA6F5B.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2343 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-113 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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