PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DL_0284E68CC1.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 541aa MW: 58886.1 Da PI: 5.8918

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DL_0284E68CC1.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.4	1.4e-06	299	320	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H Traes_3DL_0284E68CC1.1 299 FCVICGKGFKRDANLRMHMRGH 320 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.14E-5	296	323	No hit	No description
SMART	SM00355	0.015	298	320	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.614	298	325	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.4E-5	299	324	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	300	320	IPR007087	Zinc finger, C2H2
SMART	SM00355	68	347	380	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	22	385	407	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MRKSSEISMK ASSSMASDAS GNTEPGQQGV RFSSMDQSCF ARPGQSIPGY PPFFGPQSSN 60 FYLPDDSVAK ACDLFEPNPP QNNPVADWDP QAMLSNLTFL EQKIKQVKDI VQSMGNRGSQ 120 DAGGSCELAA KQQLVTADLT SIIIQLISTA GSXPPLPADL TSIIIQLIST AGSMLPSMKT 180 PLLSSNPAVR QLNTPGSPMG FGSIVNQRPS TIREEVVNDI SKTSDYEELM NTLNTAHDEK 240 DDLIKCPNPC VGEGPEPVPM EDHDVKESDD GGEAEHLPPG SYVVLQLEKE EILAPHTHFC 300 VICGKGFKRD ANLRMHMRGH GDEYKTPAAL AKPMRDSGSD PTPVTRYSCP YVGCKRNKEH 360 RKFQPLKTIL CVKNHYKRSH CDKRYTCSRC NTKKFSVIAD LKTHEKHCGR DKWLCSCGTT 420 FSRKDKLFGH VALFQGHTPA LPMDDIKASG ALEQPQGSEA MDDMVASTGY NFPGSTSDGI 480 PNLDMKVADD TRGYFSPLNF DPCFGALDDF ARPGFDISEN PFSFLPSGPG SCSFGQLSGD 540 S

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MRKSSEISMK ASSSMASDAS GNTEPGQQGV RFSSMDQSCF ARPGQSIPGY PPFFGPQSSN  60
FYLPDDSVAK ACDLFEPNPP QNNPVADWDP QAMLSNLTFL EQKIKQVKDI VQSMGNRGSQ  120
DAGGSCELAA KQQLVTADLT SIIIQLISTA GSXPPLPADL TSIIIQLIST AGSMLPSMKT  180
PLLSSNPAVR QLNTPGSPMG FGSIVNQRPS TIREEVVNDI SKTSDYEELM NTLNTAHDEK  240
DDLIKCPNPC VGEGPEPVPM EDHDVKESDD GGEAEHLPPG SYVVLQLEKE EILAPHTHFC  300
VICGKGFKRD ANLRMHMRGH GDEYKTPAAL AKPMRDSGSD PTPVTRYSCP YVGCKRNKEH  360
RKFQPLKTIL CVKNHYKRSH CDKRYTCSRC NTKKFSVIAD LKTHEKHCGR DKWLCSCGTT  420
FSRKDKLFGH VALFQGHTPA LPMDDIKASG ALEQPQGSEA MDDMVASTGY NFPGSTSDGI  480
PNLDMKVADD TRGYFSPLNF DPCFGALDDF ARPGFDISEN PFSFLPSGPG SCSFGQLSGD  540
S

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF034806	0.0	KF034806.1 Triticum aestivum isolate D cultivar Saloio STOP1 gene, complete cds.
GenBank	KF034807	0.0	KF034807.1 Triticum aestivum isolate D cultivar Ruivo STOP1 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020166559.1	0.0	zinc finger protein STOP1 homolog
Swissprot	Q943I6	0.0	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	M8BPA0	0.0	M8BPA0_AEGTA; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRING	Traes_3DL_0284E68CC1.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-152	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]