PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3B_DF7E92499.1 | ||||||||
Common Name | TRAES_3BF108500010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | RAV | ||||||||
Protein Properties | Length: 343aa MW: 37377.3 Da PI: 10.2265 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.8 | 2e-11 | 48 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW ++I++ r +r++lg+f + Aa+a++ a+++++g Traes_3B_DF7E92499.1 48 SRFKGVVPQP-NGRWGSQIYE------RhARVWLGTFPDQDLAARAYDVAALRYRG 96 689***9788.8********9......44*************************98 PP | |||||||
2 | B3 | 93.1 | 2e-29 | 162 | 260 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+ tpsdv+k++rlv+pk++ae+h + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++ Traes_3B_DF7E92499.1 162 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtperTTTTGNGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLAAGDSI 250 89*************************99887766444458999********************************************* PP EEEE-SS.SE CS B3 81 vFkldgr.se 89 +F+ + +e Traes_3B_DF7E92499.1 251 IFSCSAYgQE 260 **96654334 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-6 | 48 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-15 | 48 | 105 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.23E-22 | 48 | 104 | No hit | No description |
PROSITE profile | PS51032 | 20.521 | 49 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-19 | 49 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-22 | 49 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 86 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-38 | 157 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.93E-29 | 159 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.35E-28 | 160 | 252 | No hit | No description |
Pfam | PF02362 | 4.0E-27 | 162 | 265 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.394 | 162 | 271 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-21 | 162 | 270 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MVEDSSQYSS GASTATTESG TTGRAPTALS LPVAIADESV TSAQSAPSRF KGVVPQPNGR 60 WGSQIYERHA RVWLGTFPDQ DLAARAYDVA ALRYRGRDAA TNFPCAAAEA ELAFLGAHSK 120 AEIVDMLRKH TYADELRQGL RRGRGMGARA QPTPSWAREP LFEKAVTPSD VGKLNRLVVP 180 KQHAEKHFPL KRTPERTTTT GNGVLLNFED GEGKVWRFRY SYWNSSQSYV LTKGWSRFVR 240 EKGLAAGDSI IFSCSAYGQE KQLFIDCKKN TTVNSGKSAS PLPVVETAKG EQVRVVRLFG 300 VDIAGVKRGR AATAEQGPPE LLKRQCVPLP HGQRSPALGA FVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-47 | 159 | 268 | 11 | 115 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191173.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1 | ||||
Refseq | XP_020200371.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1 | ||||
Refseq | XP_020201146.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1 | ||||
Swissprot | Q9AWS0 | 1e-139 | Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
TrEMBL | A0A077RF86 | 0.0 | A0A077RF86_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_DF7E92499.2 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_3B_DF7E924991.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 3e-96 | related to ABI3/VP1 2 |
Publications ? help Back to Top | |||
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