PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 556aa MW: 63368.2 Da PI: 9.1446

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3B_A25F058E5.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	374.7	1.2e-114	182	551	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 ++lL++cA+ vs +d + a+ lL++++++as +gd qRla++f+++L+arla+++s++yk + s+ + ++ l+a++l+ ++P+ Traes_3B_A25F058E5.1 182 ETLLIHCAQSVSIDDRRSATDLLKQIRQHASANGDGDQRLAHCFANGLEARLAGNGSQIYKLHTISRFA---CADILKAYQLYLAACPF 267 789********************************************************99999999...9************ PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177 k+sh aNq+I++ave++++vHi+Df++ +G+QWp+L+q L++Rp+gpp+lRiT+++ p++g +e++ee+g+ L+++A++++vpf+ Traes_3B_A25F058E5.1 268 KKISHYFANQTIMNAVEKAKKVHIVDFGVYYGFQWPCLIQRLSKRPGGPPELRITAIDTPQPGfrPAERIEEIGRYLSDYAQTFKVPFK 356 ************************************************************************************* PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 ++ +a+++e++++e+L+++++E l+Vn++++ ++l+desv es+r+ vL+++++++P+v+++ + ++n++ F+ rf eal +sa Traes_3B_A25F058E5.1 357 YHG-IASQFEAVRVEDLHIEKDEILIVNSMFRFKTLMDESVVAESPRNMVLNTIRKMKPHVFIHGVTNGSYNAPFFVSRFREALFQFSA 444 .7********************************************************************************* PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 fd+lea++pr++eer +E +++re+ nv++ceg er er et+++W+ r ++a Fk++pl+++++k a+ ++ ++++ + ++e++ Traes_3B_A25F058E5.1 445 HFDMLEANIPRDNEERLLIESTIFSREAINVISCEGMERMERPETYKQWQVRNQRARFKQLPLDQEIMKRAREKVKCYHKN-FIIDEDN 532 ************************************************************************99966.*** PP GRAS 356 gslvlgWkdrpLvsvSaWr 374 g+l++gWk+r L+++S W+ Traes_3B_A25F058E5.1 533 GWLLQGWKGRILYALSTWK 551 ****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.789	155	532	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.1E-112	182	551	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MAAALHFQRA SSRGSARRXD AGLSDFVLQS QQAAQFSRGF EEGSRFLPQE SKLVIDVDSL 60 PSVWVKEDKK VVEVKREKAD AEVAIHRGKK HFYGDDLDAD EVRCCKHSAP VVDADHLVRE 120 MMDKVLLCNG ETCSRGVKEL REALQHDVAA HSGGAHGKGS GHGKGRGKKQ VKQPKKEVVD 180 LETLLIHCAQ SVSIDDRRSA TDLLKQIRQH ASANGDGDQR LAHCFANGLE ARLAGNGSQI 240 YKLHTISRFA CADILKAYQL YLAACPFKKI SHYFANQTIM NAVEKAKKVH IVDFGVYYGF 300 QWPCLIQRLS KRPGGPPELR ITAIDTPQPG FRPAERIEEI GRYLSDYAQT FKVPFKYHGI 360 ASQFEAVRVE DLHIEKDEIL IVNSMFRFKT LMDESVVAES PRNMVLNTIR KMKPHVFIHG 420 VTNGSYNAPF FVSRFREALF QFSAHFDMLE ANIPRDNEER LLIESTIFSR EAINVISCEG 480 MERMERPETY KQWQVRNQRA RFKQLPLDQE IMKRAREKVK CYHKNFIIDE DNGWLLQGWK 540 GRILYALSTW KANPQF

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MAAALHFQRA SSRGSARRXD AGLSDFVLQS QQAAQFSRGF EEGSRFLPQE SKLVIDVDSL  60
PSVWVKEDKK VVEVKREKAD AEVAIHRGKK HFYGDDLDAD EVRCCKHSAP VVDADHLVRE  120
MMDKVLLCNG ETCSRGVKEL REALQHDVAA HSGGAHGKGS GHGKGRGKKQ VKQPKKEVVD  180
LETLLIHCAQ SVSIDDRRSA TDLLKQIRQH ASANGDGDQR LAHCFANGLE ARLAGNGSQI  240
YKLHTISRFA CADILKAYQL YLAACPFKKI SHYFANQTIM NAVEKAKKVH IVDFGVYYGF  300
QWPCLIQRLS KRPGGPPELR ITAIDTPQPG FRPAERIEEI GRYLSDYAQT FKVPFKYHGI  360
ASQFEAVRVE DLHIEKDEIL IVNSMFRFKT LMDESVVAES PRNMVLNTIR KMKPHVFIHG  420
VTNGSYNAPF FVSRFREALF QFSAHFDMLE ANIPRDNEER LLIESTIFSR EAINVISCEG  480
MERMERPETY KQWQVRNQRA RFKQLPLDQE IMKRAREKVK CYHKNFIIDE DNGWLLQGWK  540
GRILYALSTW KANPQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-48	185	551	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188125.1	0.0	scarecrow-like protein 9
Swissprot	Q9XE58	1e-172	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A077RW70	0.0	A0A077RW70_WHEAT; Uncharacterized protein
STRING	Traes_3B_A25F058E5.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12518	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-164	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]