PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

M-type_MADS

Protein Properties

Length: 66aa MW: 7419.63 Da PI: 11.4785

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AS_B4247C855.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50	3.9e-16	26	65	1	40
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 kri n+ r tf kRr g+lKKA EL vLC+++ +++f Traes_3AS_B4247C855.1 26 KRIHNDVSRRATFGKRRRGLLKKAGELAVLCGVDLGLLVF 65 79********************************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.7E-14	18	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.32E-19	18	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.231	18	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-17	20	40	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-16	27	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-17	40	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-17	55	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
LGFGVDHQSP RSEPREKMGR GRTEMKRIHN DVSRRATFGK RRRGLLKKAG ELAVLCGVDL 60 GLLVFD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
UniProt	Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1. {ECO:0000269\|PubMed:10765981}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	5e-75	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153391.1	1e-23	MADS-box transcription factor 29-like
Swissprot	Q6R4R6	2e-15	CALD_BRAOB; Truncated transcription factor CAULIFLOWER D
Swissprot	Q6R4R9	1e-15	CALA_BRAOB; Truncated transcription factor CAULIFLOWER A
TrEMBL	A0A3B6EEY9	1e-24	A0A3B6EEY9_WHEAT; Uncharacterized protein
TrEMBL	A0A446N576	6e-25	A0A446N576_TRITD; Uncharacterized protein
TrEMBL	A0A446N582	5e-25	A0A446N582_TRITD; Uncharacterized protein
TrEMBL	A0A446N597	6e-25	A0A446N597_TRITD; Uncharacterized protein
TrEMBL	A0A446N5H0	1e-24	A0A446N5H0_TRITD; Uncharacterized protein
STRING	Traes_3AS_B4247C855.1	3e-40	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	3e-17	MIKC_MADS family protein

Publications ? help Back to Top
Li XF,Shen RJ,Liu PL,Tang ZC,He YK Molecular characters and morphological genetics of CAL gene in Chinese cabbage. Cell Res., 2000. 10(1): p. 29-38 [PMID:10765981] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]