PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_B4247C855.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 66aa    MW: 7419.63 Da    PI: 11.4785
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_B4247C855.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF503.9e-162665140
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                           kri n+  r  tf kRr g+lKKA EL vLC+++  +++f
  Traes_3AS_B4247C855.1 26 KRIHNDVSRRATFGKRRRGLLKKAGELAVLCGVDLGLLVF 65
                           79********************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-141866IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-191866IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.2311866IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-172040IPR002100Transcription factor, MADS-box
PfamPF003191.6E-162765IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-174055IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-175566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
LGFGVDHQSP RSEPREKMGR GRTEMKRIHN DVSRRATFGK RRRGLLKKAG ELAVLCGVDL  60
GLLVFD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1. {ECO:0000269|PubMed:10765981}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703065e-75HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153391.11e-23MADS-box transcription factor 29-like
SwissprotQ6R4R62e-15CALD_BRAOB; Truncated transcription factor CAULIFLOWER D
SwissprotQ6R4R91e-15CALA_BRAOB; Truncated transcription factor CAULIFLOWER A
TrEMBLA0A3B6EEY91e-24A0A3B6EEY9_WHEAT; Uncharacterized protein
TrEMBLA0A446N5766e-25A0A446N576_TRITD; Uncharacterized protein
TrEMBLA0A446N5825e-25A0A446N582_TRITD; Uncharacterized protein
TrEMBLA0A446N5976e-25A0A446N597_TRITD; Uncharacterized protein
TrEMBLA0A446N5H01e-24A0A446N5H0_TRITD; Uncharacterized protein
STRINGTraes_3AS_B4247C855.13e-40(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.33e-17MIKC_MADS family protein
Publications ? help Back to Top
  1. Li XF,Shen RJ,Liu PL,Tang ZC,He YK
    Molecular characters and morphological genetics of CAL gene in Chinese cabbage.
    Cell Res., 2000. 10(1): p. 29-38
    [PMID:10765981]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]