PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_DED8A29EC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 73aa MW: 7814.42 Da PI: 10.7127 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 37 | 6.6e-12 | 47 | 68 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK vk+s +pr Traes_3AL_DED8A29EC.1 47 LDDGYRWRKYGQKAVKNSSNPR 68 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-13 | 33 | 68 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-10 | 39 | 69 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.966 | 42 | 68 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0035 | 47 | 72 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-7 | 48 | 68 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
SGENDGEAGG SGSGNKEKAK GSAGRSGKKK ASKPRFAFQT RSENDILDDG YRWRKYGQKA 60 VKNSSNPRYG SSN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 3e-83 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179077.1 | 3e-40 | probable WRKY transcription factor 56 | ||||
Swissprot | Q8GY11 | 7e-16 | WRK43_ARATH; Probable WRKY transcription factor 43 | ||||
Swissprot | Q93WY4 | 4e-15 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | M8CUB7 | 2e-42 | M8CUB7_AEGTA; Putative WRKY transcription factor 56 | ||||
STRING | Traes_3AL_DED8A29EC.1 | 9e-44 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37506 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46130.2 | 8e-17 | WRKY DNA-binding protein 43 |