PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_3AL_8EF6D8BB1.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 844aa MW: 95110.8 Da PI: 7.0494 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 153.6 | 4.2e-48 | 24 | 139 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 +e k+rwlk++e+++iL+n e + +++ +++rp+sgs++L+nr++ r+fr+DGy w+kkk+gk+ +E+he LKv++v++l+cyYa++e Traes_3AL_8EF6D8BB1.2 24 REvKTRWLKPREVLDILQNCELFGIQNRTPQRPPSGSWFLFNRRVHRFFRNDGYVWQKKKNGKSGNEAHEYLKVDNVKALNCYYARAE 111 56699*********************************************************************************** PP CG-1 90 enptfqrrcywlLeeelekivlvhylev 117 +np f rr+yw+Le ++e+ivlvhy++v Traes_3AL_8EF6D8BB1.2 112 NNPRFMRRIYWMLEPAYEHIVLVHYRDV 139 *************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 65.065 | 19 | 145 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.2E-53 | 22 | 140 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.6E-43 | 26 | 139 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 2.79E-5 | 314 | 399 | No hit | No description |
SuperFamily | SSF81296 | 1.56E-12 | 315 | 398 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:2.60.40.10 | 8.5E-4 | 316 | 405 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF13637 | 5.0E-9 | 521 | 572 | No hit | No description |
SuperFamily | SSF48403 | 2.95E-14 | 522 | 613 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.4E-14 | 523 | 616 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.66E-8 | 524 | 611 | No hit | No description |
PROSITE profile | PS50297 | 15.379 | 524 | 584 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0061 | 552 | 581 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.06 | 552 | 584 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 0.0086 | 709 | 731 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.78E-5 | 709 | 759 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.876 | 710 | 739 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.022 | 711 | 731 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.013 | 732 | 754 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.468 | 733 | 761 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0041 | 734 | 754 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 844 aa Download sequence Send to blast |
MVWFVTSLLH FVCDSGHDIL NLQREVKTRW LKPREVLDIL QNCELFGIQN RTPQRPPSGS 60 WFLFNRRVHR FFRNDGYVWQ KKKNGKSGNE AHEYLKVDNV KALNCYYARA ENNPRFMRRI 120 YWMLEPAYEH IVLVHYRDVL EGSISVSVLN GSPTSNQNGS ASRADAHSSP GLTSEIVAPL 180 LNSCSPGSAE EVSSQIPTIN NETNDISLFD WRRTLEMQLS LENKERHDVN TDEVLPNHDP 240 IPAHGIQNEE LDACINLADV FDLGFSEDNH AEGSHPYPDP IDVLKYSETW LEDDQLKSIL 300 HSAPVTIDEN QWFHLHEVSP EWAFCSESAK VVIVGDFPCN LSNSSWVLFG DVKVPAVVVQ 360 QGVIRCYTPP YLGAGKVRMC MLNENGKPCT EDREFEFVEK PTNTMINGNG KPCSEAREFE 420 FQQRPTKSDN GLLLLINYVQ MLFDSHGCEL FSKFRLPLPN ARSGFPVNPS EIIGRTCEQL 480 DHENAVNCIM EVMLNNKFQD WLSSKFEQNS EGEYLLPKQY HGVIHTIAAL GYDWALKPLL 540 SNGVPINYRD ANGWTALHWA ARFGREQMVA VLVVAGAAVG ALSDPTAEDP AAKTPASIAS 600 AYGFIGISAF LSEAQLTSTL DSLESKENGK PVDHNGGVST SNAVDRVSDK CAHVDGGTDD 660 QLALKDSLGA IRNAVQAAGR IQATFRVFSL KKKKQKALQN GDSSASPSML ERATLSIQKN 720 FRRWKKRKEY QKIRKNVIKI QARFRAHRER NKYKELLQSV GILEKIMLRW FRKGVGLRGI 780 NSRAMPIDQD EEEDIVKVFR KERVETAVSE AVSRVSAIVG CPVARLDYRR MLEMHQQAKI 840 GHGK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 721 | 727 | RRWKKRK |
2 | 721 | 728 | RRWKKRKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC686696 | 0.0 | KC686696.1 Triticum aestivum calmodulin-binding transcription activator 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189402.1 | 0.0 | calmodulin-binding transcription activator 4-like isoform X1 | ||||
TrEMBL | A0A446P0K4 | 0.0 | A0A446P0K4_TRITD; Uncharacterized protein | ||||
STRING | Traes_3AL_8EF6D8BB1.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9407 | 34 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67310.1 | 2e-95 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
---|---|---|---|
|