PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_3AL_463ABD4BF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 399aa MW: 44914.4 Da PI: 5.7858 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 79.7 | 4.5e-25 | 3 | 70 | 25 | 101 |
SSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 25 gnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 g+sfvvl + +f +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+ weF++++F +++++ l++i+r+k Traes_3AL_463ABD4BF.1 3 GTSFVVLSQADFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEEFIRDQRHRLKNIHRRK 70 79***************************************9998.........*********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.7E-31 | 1 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.1E-21 | 2 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.09E-21 | 2 | 69 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.4E-25 | 2 | 69 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.0E-10 | 18 | 30 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 19 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-10 | 31 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 399 aa Download sequence Send to blast |
PSGTSFVVLS QADFCRDLLP KYFKHNNFSS FVRQLNTYGF RKVDPEQWEF ANEEFIRDQR 60 HRLKNIHRRK PIFSHSSHTQ GAGPLADSER RDYEEEIERL KCDNASLKLQ LERKKTDMES 120 KMKALEDKLF AIEGQQKNLI SYVREIVNAP GFISSLIEQS DHHGKKRRLP KPISFHEDAS 180 TQGNQIMHCD MVNSPTHELF RASFDKMESS LNSLENFFKE ASEAFGNDVS YDGDVPGHSS 240 AVVLTELHSS GESEPHAQSP PSMMHTCSAG VGDSHSSRDI AESASCPESS PLPEAHSRAD 300 SRSKVSEIDV NLEPAVTETG PSRDQQPTQD PPADANDGFW QQFLTEQPGL SHAHQEAQSE 360 RRDREANQTT AGDRGSFWWG KSVEQMTEKL GHLTSAEKT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-16 | 1 | 69 | 50 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-16 | 1 | 69 | 50 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-16 | 1 | 69 | 50 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FJ790791 | 0.0 | FJ790791.2 Triticum aestivum cultivar Atlas66 HsfA4a mRNA, complete cds. | |||
GenBank | JQ801451 | 0.0 | JQ801451.1 Triticum aestivum heat shock responsive transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165982.1 | 0.0 | heat stress transcription factor A-4b | ||||
Swissprot | Q94J16 | 0.0 | HFA4B_ORYSJ; Heat stress transcription factor A-4b | ||||
TrEMBL | A0A3B6EIC1 | 0.0 | A0A3B6EIC1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3AL_463ABD4BF.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3296 | 37 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45710.1 | 2e-67 | HSF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|