PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_463ABD4BF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 399aa    MW: 44914.4 Da    PI: 5.7858
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_463ABD4BF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind79.74.5e-2537025101
                            SSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
           HSF_DNA-bind  25 gnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                            g+sfvvl + +f +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF++++F +++++ l++i+r+k
  Traes_3AL_463ABD4BF.1   3 GTSFVVLSQADFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEEFIRDQRHRLKNIHRRK 70 
                            79***************************************9998.........*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.7E-31169IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-21269IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-21269IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-25269IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-101830IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043401943IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-103143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
PSGTSFVVLS QADFCRDLLP KYFKHNNFSS FVRQLNTYGF RKVDPEQWEF ANEEFIRDQR  60
HRLKNIHRRK PIFSHSSHTQ GAGPLADSER RDYEEEIERL KCDNASLKLQ LERKKTDMES  120
KMKALEDKLF AIEGQQKNLI SYVREIVNAP GFISSLIEQS DHHGKKRRLP KPISFHEDAS  180
TQGNQIMHCD MVNSPTHELF RASFDKMESS LNSLENFFKE ASEAFGNDVS YDGDVPGHSS  240
AVVLTELHSS GESEPHAQSP PSMMHTCSAG VGDSHSSRDI AESASCPESS PLPEAHSRAD  300
SRSKVSEIDV NLEPAVTETG PSRDQQPTQD PPADANDGFW QQFLTEQPGL SHAHQEAQSE  360
RRDREANQTT AGDRGSFWWG KSVEQMTEKL GHLTSAEKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-1616950129Heat shock factor protein 1
5d5v_B4e-1616950129Heat shock factor protein 1
5d5v_D4e-1616950129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7907910.0FJ790791.2 Triticum aestivum cultivar Atlas66 HsfA4a mRNA, complete cds.
GenBankJQ8014510.0JQ801451.1 Triticum aestivum heat shock responsive transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165982.10.0heat stress transcription factor A-4b
SwissprotQ94J160.0HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A3B6EIC10.0A0A3B6EIC1_WHEAT; Uncharacterized protein
STRINGTraes_3AL_463ABD4BF.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.12e-67HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]
  4. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]