PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_3FD608E1A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 130aa MW: 13798 Da PI: 4.9908 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 44.8 | 2.7e-14 | 106 | 130 | 5 | 29 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqP 29 l+cprC+stntkfCy+nnysl+qP Traes_3AL_3FD608E1A.1 106 GLNCPRCESTNTKFCYFNNYSLTQP 130 579*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-15 | 87 | 130 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.0E-11 | 107 | 130 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MIFLPAFLDS SDFWNTDHNQ LQLQQIGTST HSTTTSSPDG PGDGGCNNNN PKGFMATTGA 60 DYDVAGGGDD GCGGAGDGDC SRGRNNKSIS MSERARLARL PHPVPGLNCP RCESTNTKFC 120 YFNNYSLTQP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181317.1 | 2e-40 | dof zinc finger protein DOF5.1-like | ||||
TrEMBL | A0A3B6ERB6 | 6e-89 | A0A3B6ERB6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6ET28 | 7e-89 | A0A3B6ET28_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3AL_3FD608E1A.1 | 3e-92 | (Triticum aestivum) | ||||
STRING | TRIUR3_30678-P1 | 6e-89 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.2 | 1e-17 | OBF-binding protein 3 |
Publications ? help Back to Top | |||
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