PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_2A2EDCD51.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 169aa MW: 19285.7 Da PI: 10.7502 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.1 | 1.2e-21 | 26 | 103 | 58 | 128 |
NAM 58 wyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +fF++ +k+y+tg+rk+r+++ + +W++tgk+++v++ +g+l+g kk+Lv+y g+++k+ekt+Wvmh+y+l Traes_3AL_2A2EDCD51.1 26 RHFFHRPSKAYTTGTRKRRKVHtdeqggETRWHKTGKTRPVFT-DGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 103 49*****************744456555778************.99************6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.836 | 1 | 122 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.31E-24 | 22 | 122 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-8 | 27 | 103 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
IYAFSPFATR LFTLFVSGVG KDGLIRHFFH RPSKAYTTGT RKRRKVHTDE QGGETRWHKT 60 GKTRPVFTDG KLKGYKKILV LYTNYGKQRK PEKTNWVMHQ YHLGSDEEEK DGELVVSKVF 120 YQTQPRQCGX XPLSGTPPSQ RAISSRVAVQ VQLVIITVIT TRMATTTIC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359631 | 0.0 | AK359631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1100E16. | |||
GenBank | AK370035 | 0.0 | AK370035.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2103P15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232125.1 | 6e-79 | NAC domain-containing protein 73 isoform X2 | ||||
Swissprot | O49459 | 2e-66 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A287L9X0 | 5e-78 | A0A287L9X0_HORVV; Uncharacterized protein | ||||
TrEMBL | F2D6W9 | 8e-78 | F2D6W9_HORVV; Predicted protein | ||||
STRING | Traes_3AL_2A2EDCD51.1 | 1e-121 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3075 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 5e-68 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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