PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_EEE59C2E7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9696.25 Da PI: 10.8022 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4e-17 | 20 | 63 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ Traes_2DS_EEE59C2E7.1 20 RGTFSEQEERTILDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 63 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.74E-22 | 1 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-11 | 1 | 25 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.519 | 1 | 14 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 25.338 | 15 | 69 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-15 | 19 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-16 | 20 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.92E-10 | 22 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 26 | 69 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
RCGKSCRLRW INYLRPDLKR GTFSEQEERT ILDVHRILGN RWAQIAKHLP GRTDNEVKNF 60 WNSCIKKKLI AQGLDPKTHN LL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 1 | 69 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004006 | 5e-51 | AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06. | |||
GenBank | AP004259 | 5e-51 | AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02. | |||
GenBank | AP014963 | 5e-51 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 5e-51 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645809.1 | 7e-58 | myb-related protein Hv33 | ||||
Refseq | XP_015695089.1 | 4e-58 | PREDICTED: myb-related protein Hv33-like | ||||
Swissprot | P20027 | 5e-45 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A0D3GR97 | 2e-56 | A0A0D3GR97_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0EBK4 | 2e-56 | A0A0E0EBK4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0LKX6 | 1e-56 | A0A0E0LKX6_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A0E0Q8L4 | 2e-56 | A0A0E0Q8L4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A1E5WB83 | 1e-56 | A0A1E5WB83_9POAL; Transcription factor MYB86 | ||||
TrEMBL | A2YLJ6 | 2e-56 | A2YLJ6_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QAV0 | 2e-56 | I1QAV0_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q7F0R0 | 2e-56 | Q7F0R0_ORYSJ; Os07g0497500 protein | ||||
STRING | Pavir.Ba00923.1.p | 1e-57 | (Panicum virgatum) | ||||
STRING | OMERI07G12000.1 | 3e-57 | (Oryza meridionalis) | ||||
STRING | ORUFI07G15620.1 | 3e-57 | (Oryza rufipogon) | ||||
STRING | OS07T0497500-00 | 3e-57 | (Oryza sativa) | ||||
STRING | OPUNC07G13970.1 | 2e-57 | (Oryza punctata) | ||||
STRING | ORGLA07G0124200.1 | 3e-57 | (Oryza glaberrima) | ||||
STRING | OBART07G15150.1 | 3e-57 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9751 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 2e-52 | myb domain protein 67 |