PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DS_69FBC78BC.2

Common Name

NFYA-B4, NFYA-D4

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YA

Protein Properties

Length: 298aa MW: 32520.5 Da PI: 10.025

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DS_69FBC78BC.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.4	4.3e-32	148	204	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh+hA++R+Rg+gGrF Traes_2DS_69FBC78BC.2 148 EEPMFVNAKQYHAILRRRQIRAKLEAQNKL-VKARKPYLHESRHRHAMKRARGTGGRF 204 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.2E-37	146	207	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.001	147	207	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.4E-27	149	204	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.5E-24	150	172	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	152	172	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.5E-24	181	204	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MEDHPGHPIS NYDFLSGNGC HTKKLVHKNY DQDSSSAKSG RSQQEASATS DSNLNEQHTS 60 RPPSQSDNDN DHGKPDQHMI KPLLSLGNPE TVAPPPMIDC SQSFAYVPYA ADAYAGIFPG 120 YASHAIVHPQ LNAATNSRVP LPIEPAAEEP MFVNAKQYHA ILRRRQIRAK LEAQNKLVKA 180 RKPYLHESRH RHAMKRARGT GGRFLNTKQL EEQKQVSGGA SCTKVHGKNT LLQGSPAFAP 240 SASAPSNMSS FSTTGMLANQ ERTCFPLVGF RPTVSFSALN GNGKLAPNGM HQRASMMR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-23	148	209	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	197	RHRHAMKRAR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM078753	0.0	KM078753.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-B4) mRNA, complete cds.
GenBank	KM078754	0.0	KM078754.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-D4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020159951.1	0.0	nuclear transcription factor Y subunit A-7-like
Refseq	XP_020159952.1	0.0	nuclear transcription factor Y subunit A-7-like
Refseq	XP_020159953.1	0.0	nuclear transcription factor Y subunit A-7-like
TrEMBL	A0A453B4L9	0.0	A0A453B4L9_AEGTS; Uncharacterized protein
TrEMBL	M8CJ46	0.0	M8CJ46_AEGTA; Nuclear transcription factor Y subunit A-5
TrEMBL	W5C5Q0	0.0	W5C5Q0_WHEAT; CCAAT-binding transcription factor B
STRING	EMT27317	0.0	(Aegilops tauschii)
STRING	Traes_2DS_69FBC78BC.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1373	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	9e-40	nuclear factor Y, subunit A5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Qu B, et al. A wheat CCAAT box-binding transcription factor increases the grain yield of wheat with less fertilizer input. Plant Physiol., 2015. 167(2): p. 411-23 [PMID:25489021]