PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Traes_2DS_4C8E5F416.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

TCP

Protein Properties

Length: 113aa MW: 11938.3 Da PI: 4.0773

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DS_4C8E5F416.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	73.8	5.4e-23	1	61	22	80
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaessss 80 +Rls+ +a++fF+Lqd LGfdk+skt+eWLl+q+kpai+ l++ ++ a ++ +++++ Traes_2DS_4C8E5F416.1 1 MRLSVGVAREFFALQDLLGFDKASKTVEWLLTQSKPAIDRLADATQGGAAAAaaGPSKEKG 61 8*******************************************66666333222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	25.391	1	41	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	8.2E-21	1	62	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MRLSVGVARE FFALQDLLGF DKASKTVEWL LTQSKPAIDR LADATQGGAA AAAAGPSKEK 60 GEGATSSGTG FFEDAREEEQ DVRDLMKGIG GEGELDWFMS EPAAIGQPME GLD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063457	4e-43	BT063457.1 Zea mays full-length cDNA clone ZM_BFc0065H12 mRNA, complete cds.
GenBank	EU975636	4e-43	EU975636.1 Zea mays clone 494952 teosinte branched1 protein mRNA, complete cds.
GenBank	KJ726896	4e-43	KJ726896.1 Zea mays clone pUT3439 TCP transcription factor (TCP15) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186977.1	4e-74	transcription factor TCP12-like
TrEMBL	A0A3B6D4J2	1e-72	A0A3B6D4J2_WHEAT; Uncharacterized protein
TrEMBL	R7W9G1	1e-72	R7W9G1_AEGTA; Uncharacterized protein
STRING	EMT18143	2e-73	(Aegilops tauschii)
STRING	Traes_2DS_4C8E5F416.1	3e-74	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4052	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.2	5e-16	TCP family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]