PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_F37E51175.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 50aa MW: 6101.85 Da PI: 8.206 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 34.6 | 6.1e-11 | 10 | 49 | 1 | 40 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40 +fYn+Y+ e GFsvr+s+ + + n +i+ r+fvCs+eg Traes_2DL_F37E51175.1 10 RFYNKYGLEKGFSVRRSYVEWDESNCHIILRKFVCSREGV 49 6*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-8 | 10 | 49 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 50 aa Download sequence Send to blast |
MFNSEDEGYR FYNKYGLEKG FSVRRSYVEW DESNCHIILR KFVCSREGVR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 8e-64 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188064.1 | 1e-26 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453E7V5 | 2e-24 | A0A453E7V5_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DL_F37E51175.1 | 3e-29 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2449 | 9 | 76 |
Publications ? help Back to Top | |||
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