PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_D2EA554EA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 57aa    MW: 6456.46 Da    PI: 11.1427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_D2EA554EA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-162441055
                    AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +++g+Wv+eIr+p++   + r++lg+f+tae+Aa+a++ a+ +++g
  Traes_2DL_D2EA554EA.1  2 RTWGKWVSEIREPRK---KSRIWLGTFDTAEMAARAHDVAAIAIKG 44
                           46**********843...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.51E-25152No hitNo description
SMARTSM003802.3E-27157IPR001471AP2/ERF domain
PROSITE profilePS5103219.888152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-28152IPR001471AP2/ERF domain
PfamPF008479.8E-11244IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-19252IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
MRTWGKWVSE IREPRKKSRI WLGTFDTAEM AARAHDVAAI AIKGRAAHLN FPGLAHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-162522172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084739e-58AK108473.1 Oryza sativa Japonica Group cDNA clone:002-143-E08, full insert sequence.
GenBankAL6630009e-58AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAP0149609e-58AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY2582829e-58AY258282.1 Oryza sativa (japonica cultivar-group) CR251 transcription factor gene, complete cds.
GenBankCP0126129e-58CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164544.12e-34ethylene-responsive transcription factor ERF039-like
SwissprotQ9ZQP38e-29ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A453CPR83e-33A0A453CPR8_AEGTS; Uncharacterized protein
TrEMBLA0A453CQ182e-34A0A453CQ18_AEGTS; Uncharacterized protein
STRINGTraes_2AL_0F08552FB.15e-33(Triticum aestivum)
STRINGTraes_2BL_984787AC0.15e-34(Triticum aestivum)
STRINGTraes_2DL_D2EA554EA.12e-34(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.13e-22ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]