PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_C8C8B8DA9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 72aa MW: 8054.27 Da PI: 9.1162 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.8 | 5.2e-08 | 45 | 72 | 1 | 28 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIa 28 +g W++eEd++l d + ++G +W+t++ Traes_2DL_C8C8B8DA9.1 45 KGLWSPEEDQKLRDFIVRYGHSCWSTVP 72 678***********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-9 | 39 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.794 | 40 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-6 | 41 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.2E-6 | 45 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.31E-5 | 48 | 71 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
PPSLFLLGVL HSRKHCWSCA SAAAGISQES MGCKSCQKPK AQHRKGLWSP EEDQKLRDFI 60 VRYGHSCWST VP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370513 | 7e-62 | AK370513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111O05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156817.1 | 1e-23 | transcription factor LAF1-like | ||||
TrEMBL | A0A287IXA4 | 3e-23 | A0A287IXA4_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287IXA9 | 1e-23 | A0A287IXA9_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A446L9M5 | 2e-23 | A0A446L9M5_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453CFS4 | 1e-23 | A0A453CFS4_AEGTS; Uncharacterized protein | ||||
TrEMBL | M7YW73 | 2e-23 | M7YW73_TRIUA; Transcription factor LAF1 | ||||
STRING | Traes_2DL_C8C8B8DA9.1 | 7e-47 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11164 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 2e-15 | myb domain protein 19 |
Publications ? help Back to Top | |||
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