PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DL_95721ADDA.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 206aa MW: 23154.1 Da PI: 8.677

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DL_95721ADDA.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.5	3.5e-21	127	183	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ Traes_2DL_95721ADDA.1 127 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 183 678899************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-23	112	182	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.34E-20	117	184	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	124	184	IPR001356	Homeobox domain
SMART	SM00389	2.3E-20	125	188	IPR001356	Homeobox domain
CDD	cd00086	4.94E-17	127	185	No hit	No description
Pfam	PF00046	8.6E-19	127	182	IPR001356	Homeobox domain
PRINTS	PR00031	4.0E-5	155	164	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	159	182	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.0E-5	164	180	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
SAGAAAARPT DPHQHCRLAS QTCWTAATST SCRTTSWSRS RRAQRRAATT TAASAAAGXL 60 LEQIPARAAE SGDNNGSVGG GVGMIRGRDS MDPLGDEFES RSGSENVDGD AVDNAEQEQD 120 PNQRPRKKRY HRHTQHQIQE MEAFFKECPH PDDKQRKELS RELGLEPLQV KFWFQNKRTQ 180 MKNQHERHEN SQLRADNDKL RAENMR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361971	0.0	AK361971.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001J17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020199198.1	1e-102	homeobox-leucine zipper protein ROC2-like
Swissprot	Q0J9X2	2e-75	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	A0A3B6DJ91	1e-101	A0A3B6DJ91_WHEAT; Uncharacterized protein
TrEMBL	A0A453D0Z1	1e-101	A0A453D0Z1_AEGTS; Uncharacterized protein
TrEMBL	A0A453D0Z6	1e-101	A0A453D0Z6_AEGTS; Uncharacterized protein
TrEMBL	R7W5E9	1e-101	R7W5E9_AEGTA; Uncharacterized protein
STRING	Traes_2DL_95721ADDA.1	1e-151	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP26659	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21750.2	7e-50	HD-ZIP family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]