PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_81E326F1A.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 334aa    MW: 35745.7 Da    PI: 5.1595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_81E326F1A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.31.4e-111551971256
                    AP2  12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            +g+++AeIrdp+ +g   r +lg+++t  eAa+a+++a+ +++g+
  Traes_2DL_81E326F1A.2 155 WGKYAAEIRDPKRRG--YREWLGTYDTSVEAARAYDRAAFRMRGA 197
                            9*********96655..888***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.058128204IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-16153205IPR016177DNA-binding domain
SMARTSM003806.0E-21154210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-23154205IPR001471AP2/ERF domain
PfamPF008479.0E-7155196IPR001471AP2/ERF domain
CDDcd000181.02E-20155205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEFAGEADDF ALDLIREHLL GGDGGVLATA NHEQGPFCDD VTFPVLPPSA AEPQAYQQPM  60
FFPQQGQRQE QTQGYMGLTH QYVNSYPAAT AVFRAPEPVM IQFGGQPSPV RALSSTLTIS  120
VPPQGTFGWA GTAAAAAXXX XXXXXXXXXX XXXXWGKYAA EIRDPKRRGY REWLGTYDTS  180
VEAARAYDRA AFRMRGAKAI LNFPNEVGTR GAELWARPPA GPASQAAGAT NKRKRSQGED  240
ADVEVTGVVI NKAVRAEAPS PSSARVSWDT PSSLSRGTAS STVTSVATTP EGEFPPTPSS  300
SGWEQCWEAL MGGMPLLSPL SPHPALGFPQ LSVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-181552091468ATERF1
3gcc_A4e-181552091468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735750.0AK373575.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035F11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151127.10.0ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3B6DIZ60.0A0A3B6DIZ6_WHEAT; Uncharacterized protein
STRINGTraes_2DL_81E326F1A.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.18e-24ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]