PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_7D58E9850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | DBB | ||||||||
Protein Properties | Length: 201aa MW: 21795.4 Da PI: 6.9367 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.2 | 3e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +e + ++ fC ++ lC+ C H+ H+++ Traes_2DL_7D58E9850.1 4 QCDVCEAEAASVFCCADEAALCDACDRRVHRAnklagkHRRR 45 7*****************************767888888765 PP | |||||||
2 | zf-B_box | 28.3 | 3.6e-09 | 57 | 89 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 ++ C+ ++ek+ lfC++++ lC++C ++ H Traes_2DL_7D58E9850.1 57 PPLCDICQEKRGLLFCKEDRAILCRECDVQVHT 89 689***************************994 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.31 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.6E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.37E-6 | 3 | 35 | No hit | No description |
Pfam | PF00643 | 4.5E-6 | 4 | 45 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.3E-14 | 55 | 102 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.442 | 55 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.1E-8 | 56 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.78E-7 | 59 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MKVQCDVCEA EAASVFCCAD EAALCDACDR RVHRANKLAG KHRRRPRQQA RRQAPPPPLC 60 DICQEKRGLL FCKEDRAILC RECDVQVHTA SELTRRHGRF LLTGVRVSSA PAESPAPSGQ 120 EEEGNSTSPC IADSCSGDAS GTASASASAS DGSSISEYLT KTLPGWHVED FLLDDAAVAV 180 SSNKPYQQGV RIMSQWRPPT Y |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 45 | RRVHRANKLAGKHRRRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093591 | 1e-149 | FP093591.1 Phyllostachys edulis cDNA clone: bphylf056b15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168035.1 | 1e-104 | B-box zinc finger protein 20-like isoform X1 | ||||
Swissprot | Q9LQZ7 | 1e-49 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A453CJK3 | 1e-115 | A0A453CJK3_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DL_7D58E9850.1 | 1e-146 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 6e-31 | salt tolerance homolog2 |