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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Traes_2DL_7034372AC.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family |
MYB_related |
Protein Properties |
Length: 94aa MW: 10557.7 Da PI: 6.7964 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Traes_2DL_7034372AC.1 | genome | IWGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 33 | 1.4e-10 | 12 | 53 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+WT E +ll+++v ++G + W++I +++ ++ +c+ r+ +
Traes_2DL_7034372AC.1 12 AWTDAETLLLLEGVLKHGDD-WDLITQHVR-TKNKTECIARLIQ 53
8*****************88.*********.888888*999866 PP
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Functional Description ? help
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Source |
Description |
UniProt | Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269|PubMed:16055636}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK102453 | 5e-48 | AK102453.1 Oryza sativa Japonica Group cDNA clone:J033093P09, full insert sequence. |
GenBank | AL606595 | 5e-48 | AL606595.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044K18, complete sequence. |
GenBank | AP014960 | 5e-48 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
GenBank | CP012612 | 5e-48 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
GenBank | CR855151 | 5e-48 | CR855151.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0158F13, complete sequence. |
Publications
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- Sarnowski TJ,Swiezewski S,Pawlikowska K,Kaczanowski S,Jerzmanowski A
AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time. Nucleic Acids Res., 2002. 30(15): p. 3412-21 [PMID:12140326] - Zhou C,Miki B,Wu K
CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis. Plant Mol. Biol., 2003. 52(6): p. 1125-34 [PMID:14682613] - Sarnowski TJ, et al.
SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development. Plant Cell, 2005. 17(9): p. 2454-72 [PMID:16055636] - Brenchley R, et al.
Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]
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