PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_3C9A3DD05.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 71aa    MW: 8055.39 Da    PI: 11.8233
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_3C9A3DD05.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.95.4e-181260249
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyey 49
                           rie+ ++r + f kRr+g+ KKAeEL vLCda+v ++++ + +g+++ +
  Traes_2DL_3C9A3DD05.1 12 RIEDRRRRGICFRKRRAGLVKKAEELAVLCDADVGLLVINPfDGTFQRF 60
                           8*********************************999987646777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-18363IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.212351IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-19459IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-15525IPR002100Transcription factor, MADS-box
PfamPF003193.9E-201258IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-152540IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-154061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MARQRGRVVL RRIEDRRRRG ICFRKRRAGL VKKAEELAVL CDADVGLLVI NPFDGTFQRF  60
AAPATEGVQS N
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693475e-60KF469347.1 Brachypodium distachyon MADS-box transcription factor 53 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147559.14e-39MADS-box transcription factor 51-like isoform X2
SwissprotQ9XJ611e-15MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A3B6DD882e-42A0A3B6DD88_WHEAT; Uncharacterized protein
TrEMBLA0A453BV262e-42A0A453BV26_AEGTS; Uncharacterized protein
STRINGTraes_2DL_3C9A3DD05.13e-43(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154931117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.15e-07AGAMOUS-like 79
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]