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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_2536A1C8C.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 362aa MW: 38811.9 Da PI: 8.8283 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 161 | 210 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa a+++a+++++g Traes_2DL_2536A1C8C.2 161 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 210 7********.**********94....45***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.6E-33 | 160 | 219 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-38 | 161 | 224 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.711 | 161 | 218 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-22 | 161 | 219 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.81E-30 | 161 | 219 | No hit | No description |
Pfam | PF00847 | 1.7E-13 | 161 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 162 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 184 | 200 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
LDLDPRRDER KRSGGRSTGR STKVDPRRHG KRPLPADEEE EQPPPPPSAP KHEQVEEQPY 60 HHLIAHALQQ QGAASAGGSP GADVADPSPS PEAYAQYYYS ARADHDATAM VSALSHVIRA 120 TPDQQQAYYP AGSAAVSGEQ QHQHDAAAAA AIAEEQGRKR HYRGVRQRPW GKWAAEIRDP 180 KKAARVWLGT FDTAEDAAIA YDEAALRFKG TKAKLNFPER VQGRTDLGFV VTRGIPDRLQ 240 QQQQCPATVG APAMRPLPHQ QQTVVPYPDL MRYAQLLQGA GSAGGAVNLP FGAMSPPSMS 300 SSSPHILDFS TQQLIRVSPT SPAAAISSSG TTGPSTSSST TTASSPGAAW PYTGEHKNNK 360 DS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-27 | 160 | 222 | 4 | 67 | ATERF1 |
3gcc_A | 9e-27 | 160 | 222 | 4 | 67 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368254 | 0.0 | AK368254.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2070P06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191321.1 | 0.0 | ethylene-responsive transcription factor ERF113-like | ||||
TrEMBL | A0A1D5UPM8 | 0.0 | A0A1D5UPM8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DL_2536A1C8C.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4447 | 35 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 2e-34 | related to AP2 6l |
Publications ? help Back to Top | |||
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