PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_0D933D88B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 347aa    MW: 38463.3 Da    PI: 6.381
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_0D933D88B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.7e-102733082055
                            HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
               Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                            +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Traes_2DL_0D933D88B.1 273 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 308
                            4679*****************************885 PP
2ELK37.83.9e-13228249122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            ELK qLl+KYsgyL+sL+qEFs
  Traes_2DL_0D933D88B.1 228 ELKYQLLKKYSGYLSSLRQEFS 249
                            9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.7E-2184128IPR005540KNOX1
PfamPF037904.3E-2185126IPR005540KNOX1
SMARTSM012567.1E-29132183IPR005541KNOX2
PfamPF037912.7E-24138182IPR005541KNOX2
SMARTSM011881.2E-7228249IPR005539ELK domain
PROSITE profilePS5121311.627228248IPR005539ELK domain
PfamPF037894.1E-10228249IPR005539ELK domain
PROSITE profilePS5007112.892248311IPR001356Homeobox domain
SuperFamilySSF466891.2E-19249322IPR009057Homeodomain-like
SMARTSM003894.4E-13250315IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-28253312IPR009057Homeodomain-like
CDDcd000867.69E-13260312No hitNo description
PfamPF059209.6E-17268307IPR008422Homeobox KN domain
PROSITE patternPS000270286309IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDQRSFGNLG AGEGGSSSSK ASSSFLQLQP LSTTTVASGP GPMGGTYYGT PLALHQAAAA  60
AGSSQYQFHH HKSSGEEISQ AEAEAIKAKI MAHPQYTALL VAYLDCQKVG APPDVLERLT  120
AMAAKLDAHP PGRLHEARDP ELDQFMEAYC NMLAKYREEL TRPIEEAMEF LKRVEAQLDS  180
ITGGGHGSAR LSLADGKCEG AGSSEDEMDA SGRENEPPEI DPRAEDKELK YQLLKKYSGY  240
LSSLRQEFSK KKKKGKLPKE ARQKLLHWWE LHYKWPYPSE TEKIALAEST GLDQKQINNW  300
FINQRKRHWK PSEDMPFVMM EGFHPQNAAA LYMDGQFMAD GMYSLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5440450.0AF544045.1 Hordeum vulgare knotted 1 (kn1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180358.10.0homeobox protein knotted-1-like 12
SwissprotO650341e-172KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-172KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A453BNK60.0A0A453BNK6_AEGTS; Uncharacterized protein
TrEMBLW5BR510.0W5BR51_WHEAT; Uncharacterized protein
STRINGTraes_2DL_0D933D88B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-102KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]
  7. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]