PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_DD07C2EE6.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 220aa MW: 22408.1 Da PI: 9.1913 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk++ + L H +H Traes_2BS_DD07C2EE6.2 90 YECSVCGKVYASYQALGGHKTSH 112 99********9999998887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.034 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.04 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.42E-8 | 90 | 161 | No hit | No description |
Pfam | PF13912 | 5.2E-13 | 90 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-10 | 138 | 163 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.349 | 139 | 161 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 139 | 161 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 141 | 161 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSTDDVSRKS PVPPPSPPPM DSWARGGRRS RRRGGGGSGS ASSGGVAESE EEYLALSLLM 60 LSRGVRGEVE DGGIGGLKGV GAAPTKAQGY ECSVCGKVYA SYQALGGHKT SHRKPPTPPV 120 ASAGGEEASG GAPVEAKVHQ CSLCHRKFPS GQALGGHKRL HYEGGAATDG TGKDKEAAKA 180 KAAALLRDFD LNLPASGVAG DEAESPPPEA KRARLMLLAV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00118 | ampDAP | Transfer from AT5G67450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153235.1 | 1e-100 | zinc finger protein AZF1-like | ||||
TrEMBL | A0A3B6C352 | 1e-153 | A0A3B6C352_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446M384 | 1e-153 | A0A446M384_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BS_DD07C2EE6.2 | 1e-154 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 6e-22 | salt tolerance zinc finger |
Publications ? help Back to Top | |||
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