PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_B1A73C7A8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 307aa    MW: 32887.9 Da    PI: 7.8007
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_B1A73C7A8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-1750100155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s++ GVr+++ +grWvAeI+d +   ++ r +lg+f ta+ Aa+a+++a++ l+g
  Traes_2BS_B1A73C7A8.1  50 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETADAAARAYDEAARLLRG 100
                            79********.7*********32...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-1950109IPR016177DNA-binding domain
PfamPF008471.1E-1150100IPR001471AP2/ERF domain
CDDcd000184.27E-1750108No hitNo description
PROSITE profilePS5103219.84951108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2751108IPR001471AP2/ERF domain
SMARTSM003802.1E-3351114IPR001471AP2/ERF domain
PRINTSPR003678.9E-75263IPR001471AP2/ERF domain
PRINTSPR003678.9E-77490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MELHFQVQPP VLQLQDYCYY YQQQQEAAAA AAQAKPTKPR GRKKGSTSHS KFVGVRQRPS  60
GRWVAEIKDT TQKIRMWLGT FETADAAARA YDEAARLLRG AEARTNFAPR ISPDCPLAVR  120
IRGLLHHKKL KKARLPAASA KIPGSSSTPP APAAYATSNS NSNSNSNSNS MDGACGGASS  180
SSSSSALSCD GAMKQGGGAL DAGEVYRPDF APVAGTEELE SWMFESSFGQ FPALDGFAAV  240
DACTLPAAST EETSVAPAAG MVEFERMKVE RRISASLYAM NGLQEYFDRV FEASAGDPLW  300
DLSPLCQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-13491071271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741060.0AK374106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3054G17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148323.11e-161ethylene-responsive transcription factor RAP2-11
TrEMBLA0A3B6C3D30.0A0A3B6C3D3_WHEAT; Uncharacterized protein
STRINGTraes_2BS_B1A73C7A8.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-20related to AP2 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]