PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_5F0CE5D18.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 589aa    MW: 65207.7 Da    PI: 8.9523
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_5F0CE5D18.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.46.8e-14152188340
                    TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            + +C+Ck+skClkkYCeCfa+g++C++ C+C++C N+ 
  Traes_2BS_5F0CE5D18.1 152 RTQCKCKNSKCLKKYCECFASGRYCND-CNCKNCYNNV 188
                            679************************.********96 PP
2TCR48.91.3e-15236276141
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                            k++kgC+Ck+s+ClkkYCeCf ++  Cse+CkC dCkN e+
  Traes_2BS_5F0CE5D18.1 236 KHMKGCHCKRSECLKKYCECFRSNILCSENCKCMDCKNYES 276
                            589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.5E-12150190IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.047151276IPR005172CRC domain
PfamPF036385.5E-10153187IPR005172CRC domain
SMARTSM011142.0E-17236277IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.1E-12239274IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MDNPLNLPPG SVQPNFCSAF YARKSGSAAT AASLSQALPL WPPVPWPTLM VRKHHMPFPT  60
QPAAKKLQVR RLSPVLSQDL PLREALQVAE LPPPRVQLRP LQQAPPVLKQ SLPKTEVPVV  120
LPMRATSVDV RWNARYPWSE TSCESTDRTS RRTQCKCKNS KCLKKYCECF ASGRYCNDCN  180
CKNCYNNVGH EAARQVAIDA AMERNPMAFM PKIGNIPPHA AQNREFKVAE GPLVGKHMKG  240
CHCKRSECLK KYCECFRSNI LCSENCKCMD CKNYESNEDR KAIRRITRHQ QHLVYAHHMQ  300
NPATMGITGP YAALSPAAEK LSNLSVASSG RDQLINNNDS SQVTSSLLTP VPIEGTKSAV  360
KVEPHGVTYR PLLADVIQIE NVNELCKVLL LVSRQAAGAS VGVKENTNRR KLDQADSCLS  420
SINHDMEAVE KQRDEQVCST ENSLTAVPVS EVRAGAARSD PSDTCKYDRR PVSPETQKLM  480
CNEQDRLFLT PSVAAVIPSA TKQRLPDTYK EQEKRILKTL HDYLGELVNC GRLHEEKLSS  540
MPSKFFHEQT SVGSSCGSSS VSRVAEVARV GQTIRQSLHS PASVKSPGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-251442832130Protein lin-54 homolog
5fd3_B6e-251442832130Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3721950.0AK372195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198634.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A3B6C0Y00.0A0A3B6C0Y0_WHEAT; Uncharacterized protein
TrEMBLA0A446LYH40.0A0A446LYH4_TRITD; Uncharacterized protein
STRINGTraes_2BS_5F0CE5D18.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138462025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-72Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]