PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_4600D4B54.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 570aa    MW: 64414.1 Da    PI: 6.4646
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_4600D4B54.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.91.3e-1292015692373
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            +elL++cAea+s++ +e+  +l+++ + ++s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s+e l+++k++++++P
  Traes_2BS_4600D4B54.2 201 KELLTKCAEALSEDRTEEFLKLVQEARGTVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPE---SKELLSYMKILYNICP 285
                            689*****************************************************************9...9*************** PP

                   GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175
                            ++kf++++aN aI ea+ +e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e le +g+ L+++ +e+++p
  Traes_2BS_4600D4B54.2 286 YFKFGYMAANGAIAEALRSEDNIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLEIVGNMLTSMSKEFNIP 373
                            *************************************************************999999********************* PP

                   GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                            +ef++l     ++++ e+L+++pgEa+aVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rfle+++y
  Traes_2BS_4600D4B54.2 374 LEFTPL-PVYATQVTKEMLKIRPGEAVAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFLETMDY 460
                            *****6.77788999************************************************************************* PP

                   GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                            ysa+f+s++a+lpr+s+eri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp+pls+++++ +k ll+ ++ d y++
  Traes_2BS_4600D4B54.2 461 YSAMFESIDANLPRDSKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLSMAGFKPYPLSSYVNSVIKKLLACYS-DKYTL 547
                            *******************************************************************************999.55*** PP

                   GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                            ee++g+++lgWk+r+L+s+SaW
  Traes_2BS_4600D4B54.2 548 EEKDGAMLLGWKSRKLISASAW 569
                            ********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.123174551IPR005202Transcription factor GRAS
PfamPF035144.5E-127201569IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDLHQLFKYR LTGANVFWEI PTENNLANSS WQTSPLKLEF SNSPYTPLST QLECDNLSAL  60
SNTPDNQSST ETISAQPISP LEADSSYIKA GSIRENIQVR PDPLYATSRH NMQQTLRDIE  120
NVLMAPDADD ATTSTKHEFE DTKPAQLMRQ RSRTWSHESR QPLPGVVRPH FASGGYPTAS  180
YEFRPEKRQR ELRDDRQHIV KELLTKCAEA LSEDRTEEFL KLVQEARGTV SINGEPIQRL  240
GAYLLEGLVA RHGNSGTNIY RALKCREPES KELLSYMKIL YNICPYFKFG YMAANGAIAE  300
ALRSEDNIHI IDFQIAQGTQ WITLIQALAA RPGGPPHVRI TGIDDPVSEY ARGEGLEIVG  360
NMLTSMSKEF NIPLEFTPLP VYATQVTKEM LKIRPGEAVA VNFTLQLHHT PDESVDVNNP  420
RDGLLRMVKG LSPKVTTLVE QESHTNTTPF LMRFLETMDY YSAMFESIDA NLPRDSKERI  480
SVEQHCLAKD IVNIIACEGK DRVERHELLG KWKSRLSMAG FKPYPLSSYV NSVIKKLLAC  540
YSDKYTLEEK DGAMLLGWKS RKLISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-721845693378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597010.0AK359701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191335.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A3B6C4700.0A0A3B6C470_WHEAT; Uncharacterized protein
TrEMBLA0A446M5D80.0A0A446M5D8_TRITD; Uncharacterized protein
STRINGTraes_2BS_4600D4B54.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]