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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_1B0F27580.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bZIP | ||||||||
Protein Properties | Length: 316aa MW: 35758.4 Da PI: 9.5268 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.8 | 6.5e-10 | 15 | 59 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr++r NR +A rs +RK +i eLe+kv +L++e ++L +l Traes_2BS_1B0F27580.2 15 KRAKRILANRQSAARSKERKARYITELERKVHTLQTEATTLSAQL 59 9***************************************99766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-14 | 11 | 75 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.346 | 13 | 76 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.1E-7 | 15 | 60 | No hit | No description |
Pfam | PF00170 | 1.5E-8 | 15 | 60 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.97E-10 | 15 | 66 | No hit | No description |
CDD | cd14703 | 1.78E-20 | 16 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MSSEQLSELA SVDPKRAKRI LANRQSAARS KERKARYITE LERKVHTLQT EATTLSAQLM 60 LFQRDTTGLS AENTELKIRL QAMEQQAQLR DALNNTLKQE LERLKIATGE MTKPDEAYNT 120 GMHHVPYNPS FFQLSEQHTP QHHSSVHQLP SQFQPPHPNV PSHQMLSHPN TFPDMMQQDS 180 LGRFQGLDIG KGSVAVKLEA EAAAKSEGSS ISADWGLSDH TMCLVQAREE EKVAYCHRPC 240 RRRWMTDGCR GWLATKKCSA ILSRRMEIPA SLLTVEGDHR RHCPWRRRER AGRRQAEGGQ 300 GRSPALLNAA RAEENI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 294 | RRHCPWRRRERAGRRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374900 | 0.0 | AK374900.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3079L07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158207.1 | 1e-151 | transcription factor RF2b-like isoform X1 | ||||
Swissprot | Q6S4P4 | 1e-100 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A2X0SK43 | 0.0 | A0A2X0SK43_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BS_1B0F27580.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2683 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 1e-63 | bZIP family protein |
Publications ? help Back to Top | |||
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