PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_1484A7516.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HSF | ||||||||
Protein Properties | Length: 475aa MW: 52080.4 Da PI: 6.3771 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.8 | 8.3e-34 | 80 | 172 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+y+++++++l+ +isw gnsfvv++++ fa++vLp+ Fkh+nf+SFvRQLn+YgF kv+ ++ weF+h+ F +g Traes_2BS_1484A7516.1 80 FLSKTYDLVSEPQLDGVISWGPAGNSFVVWNPSAFARDVLPHNFKHNNFSSFVRQLNTYGFCKVHANR---------WEFAHEGFLRG 158 9***************************************************************9988.........*********** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 +k+ll++i r++s+ Traes_2BS_1484A7516.1 159 SKHLLKTIVRRRSS 172 **********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 5.65E-33 | 76 | 169 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.0E-53 | 76 | 169 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.5E-36 | 76 | 169 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.0E-30 | 80 | 169 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.0E-16 | 80 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.0E-16 | 118 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.0E-16 | 131 | 143 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MEHTHTGTNT TPAAVTASAS ASMDAALLLE PKLEMLQQHP AGHYAALDHH LIPPPPALVV 60 PCEPPRPLEA LLQGPQLPPF LSKTYDLVSE PQLDGVISWG PAGNSFVVWN PSAFARDVLP 120 HNFKHNNFSS FVRQLNTYGF CKVHANRWEF AHEGFLRGSK HLLKTIVRRR SSPTQQSSPQ 180 PGSSIFRKIQ SSSCGESTLD PELRSLRREK NALLQEVARL KEEHNQTIEH MNALNQRLET 240 AEDRQKQVVS FLAKLLQNPD FLRQLKMHRG RRDGIDSSRV KRKFLKHVPH GSRDSGDSSL 300 PRTAESTCSP AHPVAHDAIA DLQSFLLEDT DLSDGMLPGS FGLDGVEASE DIGALVQVFD 360 QQDFGTGAEL LEIPPVSAAA HCQDSTFGRS KGKNVMCSGG TDGTSSQANC LVSLPGNVCK 420 LMDADGEQIW GADTFFQSSC SGTSQQAYVS DPYLMEIPDK PERFWELDSR FGGTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-24 | 72 | 172 | 11 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM446028 | 0.0 | HM446028.1 Hordeum vulgare subsp. vulgare heat shock factor A3 (HsfA3) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146599.1 | 0.0 | heat stress transcription factor A-3-like | ||||
Swissprot | Q6H6Q7 | 0.0 | HSFA3_ORYSJ; Heat stress transcription factor A-3 | ||||
TrEMBL | A0A3B6C3R1 | 0.0 | A0A3B6C3R1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446M4T8 | 0.0 | A0A446M4T8_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BS_1484A7516.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9010 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 6e-66 | heat shock transcription factor A3 |
Publications ? help Back to Top | |||
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