PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 361aa MW: 38732.6 Da PI: 4.6737

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BL_FD8C2F815.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ +++++G +W++ ++ g+ R++k+c++rw +yl Traes_2BL_FD8C2F815.1 16 RGSWTPEEDMRLIAYIQKFGHANWRALPKQAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	56.1	8.7e-18	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e l++++++lG++ W++Ia++++ gRt++++k+ w+++l Traes_2BL_FD8C2F815.1 69 RGNFTVEEEETLIKLHNMLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.555	11	63	IPR017930	Myb domain
SuperFamily	SSF46689	1.24E-30	13	110	IPR009057	Homeodomain-like
SMART	SM00717	8.4E-13	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-15	16	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-23	17	70	IPR009057	Homeodomain-like
CDD	cd00167	1.34E-10	18	63	No hit	No description
PROSITE profile	PS51294	24.945	64	118	IPR017930	Myb domain
SMART	SM00717	6.7E-16	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-16	69	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-26	71	118	IPR009057	Homeodomain-like
CDD	cd00167	2.49E-12	71	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MGKGRAPCCA KVGLNRGSWT PEEDMRLIAY IQKFGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTVEEEETL IKLHNMLGNK WSKIAACLPG RTDNEIKNVW NTHLKKRVAA 120 SAGEQKKGGA KGKKKTTCVD VPAPAPSPSP SSSTTTTTTT TTNCSSGESG EQSNSSKELE 180 FELDKIEIPM LDLGFDLDML LDTVTNTHCP AIPSAPTSPC SSASPPCVVD DGALLDLPEI 240 DIVPELWSIM DGEGGAGACA ETAQDNAAPC HGKGTEARAA TADDDDGKEW WLEDLEKELG 300 LWGPIEDYQH QQPDPQGCVD PLSASVDDPV SCYFQAGPAR ATSAVQGPEA SAVLANIPMD 360 L

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MGKGRAPCCA KVGLNRGSWT PEEDMRLIAY IQKFGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTVEEEETL IKLHNMLGNK WSKIAACLPG RTDNEIKNVW NTHLKKRVAA  120
SAGEQKKGGA KGKKKTTCVD VPAPAPSPSP SSSTTTTTTT TTNCSSGESG EQSNSSKELE  180
FELDKIEIPM LDLGFDLDML LDTVTNTHCP AIPSAPTSPC SSASPPCVVD DGALLDLPEI  240
DIVPELWSIM DGEGGAGACA ETAQDNAAPC HGKGTEARAA TADDDDGKEW WLEDLEKELG  300
LWGPIEDYQH QQPDPQGCVD PLSASVDDPV SCYFQAGPAR ATSAVQGPEA SAVLANIPMD  360
L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-27	14	118	2	105	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	3e-27	14	118	25	128	MYB TRANSFORMING PROTEIN
1mse_C	2e-27	14	118	2	105	C-Myb DNA-Binding Domain
1msf_C	2e-27	14	118	2	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269\|PubMed:7920701}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248649	0.0	AK248649.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178a22, mRNA sequence.
GenBank	AK369689	0.0	AK369689.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095N02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185012.1	0.0	myb-related protein Zm1-like
Swissprot	P20024	1e-111	MYB1_MAIZE; Myb-related protein Zm1
TrEMBL	A0A3B6CCE7	0.0	A0A3B6CCE7_WHEAT; Uncharacterized protein
TrEMBL	A0A446MP35	0.0	A0A446MP35_TRITD; Uncharacterized protein
STRING	Traes_2BL_FD8C2F815.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2154	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	7e-70	myb domain protein 63

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]