PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_B2811EA531.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 486aa    MW: 52016.3 Da    PI: 6.4338
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_B2811EA531.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.31.5e-83734752374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              +lLl+ A a + gd+++a  +L+++  +as +g dp qR+aayf+ ALa+rl+   +  +ka ++++t++++ +e++ a+++f+++
  Traes_2BL_B2811EA531.2  73 MRLLLSSAVAGEVGDTHAAAVALQEVYRQASFRGgDPAQRVAAYFADALASRLLL--PPPAKAKTTTTTTTTTREEQFLAFTMFYQA 157
                             6899*************************999998*******************9..6666666666666678999999******** PP

                    GRAS  88 sPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp..eg..............ppslRiTgvgspesgske 156
                             sP+++f+h+taNqaI+ea+e    +r+H++Dfd+s G+QWp+L+q+L++ +  ++              p slRiTg+g+    s++
  Traes_2BL_B2811EA531.2 158 SPFYQFAHFTANQAIVEAFEAGgrRRLHVVDFDVSFGFQWPSLIQSLSDAAttSSsessqdgsgdccdePVSLRITGFGA----SAD 240
                             *******************9766699*********************987744115677888999999777*********....9** PP

                    GRAS 157 eleetgerLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                             el+ t+ rLa+fA+ + +++fef+ +v +  ed + e+++ +p  +++Vnlv+   +   ++ s    +++ L  ++sl+P +v ++
  Traes_2BL_B2811EA531.2 241 ELRDTEARLARFADGCpNLRFEFEGVVNNGPEDGRHERIKNDPAATVVVNLVFPAAQNA-RPSSW--DTRSALAHIRSLNPSLVFLI 324
                             **************9769*******9999************************777765.33333..3589***************9 PP

                    GRAS 243 eqe.........adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre....rhetlekWr 316
                             ++            ++s+s+l +f+  l+yy+a+f+sl++ lp++s eri +Er  lg ei+++ a   ++r +      +  + W+
  Traes_2BL_B2811EA531.2 325 DKIdegsggkgaGRCGSASLLPQFAANLRYYAAVFESLHECLPADSAERIAIERDHLGVEISDAMASLDRRRHNgdlaADQISRGWK 411
                             973234444442334777*************************************************999987622214566788** PP

                    GRAS 317 erleeaGFkpvplsekaakqaklllrkvk.sdg...yrveee.sgslv.lgWkdrpLvsvSaWr 374
                             erle+aGF+ ++ls+++++qaklll++ + + g   +rv e  +g ++ lgW+dr+L+++SaWr
  Traes_2BL_B2811EA531.2 412 ERLESAGFEDARLSSRTVSQAKLLLKMKSgGCGgggFRVIEAgDGKAMaLGWRDRALITASAWR 475
                             *************************987643333449998664555555**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.89446449IPR005202Transcription factor GRAS
PfamPF035145.3E-8173475IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MNLTLSLGVN GGGAAAKKRK VMDGAGDVGV LGAGDGGDRS TVMRLLQARD RMVKVELDHD  60
DGDVSDRGAS PLMRLLLSSA VAGEVGDTHA AAVALQEVYR QASFRGGDPA QRVAAYFADA  120
LASRLLLPPP AKAKTTTTTT TTTREEQFLA FTMFYQASPF YQFAHFTANQ AIVEAFEAGG  180
RRRLHVVDFD VSFGFQWPSL IQSLSDAATT SSSESSQDGS GDCCDEPVSL RITGFGASAD  240
ELRDTEARLA RFADGCPNLR FEFEGVVNNG PEDGRHERIK NDPAATVVVN LVFPAAQNAR  300
PSSWDTRSAL AHIRSLNPSL VFLIDKIDEG SGGKGAGRCG SASLLPQFAA NLRYYAAVFE  360
SLHECLPADS AERIAIERDH LGVEISDAMA SLDRRRHNGD LAADQISRGW KERLESAGFE  420
DARLSSRTVS QAKLLLKMKS GGCGGGGFRV IEAGDGKAMA LGWRDRALIT ASAWRPCRRS  480
VGKNEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3710147646379Protein SCARECROW
5b3h_D2e-3710147646379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173956.10.0scarecrow-like protein 23
TrEMBLA0A3B6C7H60.0A0A3B6C7H6_WHEAT; Uncharacterized protein
STRINGTraes_2BL_B2811EA531.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.13e-35GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]