PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_A36519520.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ZF-HD
Protein Properties Length: 357aa    MW: 40231.8 Da    PI: 12.0446
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_A36519520.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.23.9e-282169356
            ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56
                           +++YkeC++NhAa++Gg+a+DGCgE+mp+     ++++lkCaACgCHR+FHRr 
  Traes_2BL_A36519520.2 21 GAKYKECMRNHAAAMGGQAFDGCGEYMPA-----SPDSLKCAACGCHRSFHRRA 69
                           579*************************9.....799***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-222369IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-212368IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.3E-242368IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0482469IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMDHLSLVPY EGGSGAGGDA GAKYKECMRN HAAAMGGQAF DGCGEYMPAS PDSLKCAACG  60
CHRSFHRRAG SLTGGACPAP FFFSPPPPPP PHHHPPPHHP VLQGFLPSAP PRPPQLALPY  120
HAVPAAWHHA LLDPARAGSE TXPGGRLQPR VRERKLREEA APDQVHPGAE GEDARLRREA  180
GVAHQPRRRR CPRALLPRDR GQAERPQGLD AQPQAPARLA HLHRGRHRHG HGDGHRHQPR  240
SPRHWHWDRR WRWRWRWRWS GHRRWRRRRR RHGRRLASTR RRLVALPLPH QRLAVLALAN  300
EHGVLLIARA LDLINALSVS CQRAAGVNDP LIPRMPPPQR PCRTSWYRTE GIFVPLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257270RWSGHRRWRRRRRR
2262269RRWRRRRR
3262270RRWRRRRRR
4265273RRRRRRHGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731510.0AK373151.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022I13.
GenBankAK3744860.0AK374486.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3066K06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181898.11e-68zinc-finger homeodomain protein 8-like
TrEMBLA0A453C0F83e-72A0A453C0F8_AEGTS; Uncharacterized protein
STRINGTraes_2BL_A36519520.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.14e-18zinc finger homeodomain 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]