PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_A36519520.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 357aa MW: 40231.8 Da PI: 12.0446 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 89.2 | 3.9e-28 | 21 | 69 | 3 | 56 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 +++YkeC++NhAa++Gg+a+DGCgE+mp+ ++++lkCaACgCHR+FHRr Traes_2BL_A36519520.2 21 GAKYKECMRNHAAAMGGQAFDGCGEYMPA-----SPDSLKCAACGCHRSFHRRA 69 579*************************9.....799***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-22 | 23 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-21 | 23 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.3E-24 | 23 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.048 | 24 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MMDHLSLVPY EGGSGAGGDA GAKYKECMRN HAAAMGGQAF DGCGEYMPAS PDSLKCAACG 60 CHRSFHRRAG SLTGGACPAP FFFSPPPPPP PHHHPPPHHP VLQGFLPSAP PRPPQLALPY 120 HAVPAAWHHA LLDPARAGSE TXPGGRLQPR VRERKLREEA APDQVHPGAE GEDARLRREA 180 GVAHQPRRRR CPRALLPRDR GQAERPQGLD AQPQAPARLA HLHRGRHRHG HGDGHRHQPR 240 SPRHWHWDRR WRWRWRWRWS GHRRWRRRRR RHGRRLASTR RRLVALPLPH QRLAVLALAN 300 EHGVLLIARA LDLINALSVS CQRAAGVNDP LIPRMPPPQR PCRTSWYRTE GIFVPLL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 257 | 270 | RWSGHRRWRRRRRR |
2 | 262 | 269 | RRWRRRRR |
3 | 262 | 270 | RRWRRRRRR |
4 | 265 | 273 | RRRRRRHGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373151 | 0.0 | AK373151.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022I13. | |||
GenBank | AK374486 | 0.0 | AK374486.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3066K06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181898.1 | 1e-68 | zinc-finger homeodomain protein 8-like | ||||
TrEMBL | A0A453C0F8 | 3e-72 | A0A453C0F8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2BL_A36519520.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13649 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 4e-18 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
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