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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_9CD6E043A.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 92aa MW: 10303.5 Da PI: 10.6548 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.5e-19 | 17 | 67 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr +k +g+Wv+eIr p g ++r++lg+f +ae+Aa a++ a+++l+g Traes_2BL_9CD6E043A.2 17 SQYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 67 78*****999.**********8...325*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-23 | 17 | 76 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.9E-12 | 17 | 67 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.39E-32 | 17 | 75 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.2E-32 | 18 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.512 | 18 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-37 | 18 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MDESGKEQLP NSSSSQSQYR GVRKRKWGKW VSEIRQPGTK TRIWLGSFES AEMAAVAHDV 60 AALRLRGRDA QLNFPGSVDR LPRPANSHPD DV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-18 | 18 | 79 | 5 | 67 | ATERF1 |
3gcc_A | 3e-18 | 18 | 79 | 5 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096569 | 6e-91 | FP096569.1 Phyllostachys edulis cDNA clone: bphyem127p14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581277.1 | 2e-50 | ethylene-responsive transcription factor ERF027 | ||||
Refseq | XP_020194473.1 | 1e-50 | ethylene-responsive transcription factor ERF021-like | ||||
Swissprot | Q9C9I2 | 3e-34 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | A0A3B6CA29 | 6e-60 | A0A3B6CA29_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_9CD6E043A.2 | 6e-62 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 2e-28 | ERF family protein |
Publications ? help Back to Top | |||
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