PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_984787AC0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 131aa    MW: 14249.1 Da    PI: 10.4032
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_984787AC0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-1956105255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr +  +g+Wv+eIr+p++   + r++lg+f+tae+Aa+a++ a+ +++g
  Traes_2BL_984787AC0.1  56 TYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFDTAEMAARAHDVAAIAIKG 105
                            69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-3356114IPR001471AP2/ERF domain
SMARTSM003801.5E-3756119IPR001471AP2/ERF domain
PROSITE profilePS5103223.16956113IPR001471AP2/ERF domain
PfamPF008474.1E-1356105IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2356114IPR016177DNA-binding domain
PRINTSPR003671.5E-115768IPR001471AP2/ERF domain
CDDcd000189.02E-3257115No hitNo description
PRINTSPR003671.5E-117995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MEHEQVLVVP QVSGNSCCTC SNTSSGSLNA SSPSSDDSSA VAAGKKRPRR DLKHPTYRGV  60
RMRTWGKWVS EIREPRKKSR IWLGTFDTAE MAARAHDVAA IAIKGRAAHL NFPDLAHELP  120
RAASAAPKDV Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-20531131172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278642e-94KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164544.11e-89ethylene-responsive transcription factor ERF039-like
SwissprotQ9ZQP32e-43ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A3B6CDP82e-90A0A3B6CDP8_WHEAT; Uncharacterized protein
TrEMBLA0A446MLQ82e-90A0A446MLQ8_TRITD; Uncharacterized protein
STRINGTraes_2BL_984787AC0.19e-93(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.19e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]